Locus 6906

Sequence ID 3L_DroMel_CAF1
Location 18,635,485 – 18,635,605
Length 120
Max. P 0.535770
window11200

overview

Window 0

Location 18,635,485 – 18,635,605
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.92
Mean single sequence MFE -44.52
Consensus MFE -34.60
Energy contribution -35.08
Covariance contribution 0.48
Combinations/Pair 1.25
Mean z-score -1.46
Structure conservation index 0.78
SVM decision value 0.00
SVM RNA-class probability 0.535770
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18635485 120 + 23771897
GCUGUUGCGGCUGCUGCUCAAAUACCAAUCCCUGAUUGGUCGGAGGCGGCGGUGCUAAAGCCUCAGGAUUGUCCAGUUCACUGUCCUGCAGAAAAUGGAAGCGUCCUGUGCCCAAGACCU
(((...(((.(((((((((....(((((((...)))))))..)).))))))))))...)))(.((((((..((((.....(((.....)))....))))...)))))).).......... ( -42.90)
>DroSec_CAF1 8322 120 + 1
GCUGUUGCGGCUGCUGCUCAAAUACCAAUCCCUGAUUGGUAGGUGGCGGCGGUGCUAAAGCCUCAGGAUUGUCCAGUUCACUGUCCUGCAGAAAAUGGAAGCGUCCUGUGCCCAAGACCU
(((...(((.(((((((.((..((((((((...))))))))..))))))))))))...)))(.((((((..((((.....(((.....)))....))))...)))))).).......... ( -47.40)
>DroSim_CAF1 10099 120 + 1
GCUGUUGCGGCUGCUGCUCAAAUACCAAUCCCUGAUUGGUAGGUGGCGGCGGUGCUAAAGCCUCAGGAUUGUCCAGUUCACUGUCCUGCAGAAAAUGGAAGCGUCCUGUGCCCAAGACCU
(((...(((.(((((((.((..((((((((...))))))))..))))))))))))...)))(.((((((..((((.....(((.....)))....))))...)))))).).......... ( -47.40)
>DroEre_CAF1 8031 120 + 1
GCUGCUGCGGUUGCUGCUCAAAUACCAAUCCCUGAUUGGGCGGAGGCGGCGGGGCUAAAGCCUCAGGAUUGUCCAGUUCACUGUCCUGCAGAAAAUGGAAGCUUCCUGUGCCCAAGACCU
((....))(((((((((((.....((((((...))))))...)).))))).((((........(((((...((((.....(((.....)))....))))....))))).))))..)))). ( -42.80)
>DroAna_CAF1 7700 120 + 1
AUUGCUGCUGCUGUGCUUCAAAUACCAAUCCAGUAUUCGCAGCUGGCGGUGGGGCUAGAACUUCGGGAGUGUCCAGUUCGCUGUCCUGCAGAAAGUGGAAGCUCCCCGUGCCUAAGACCU
.(..(((((((((((.....(((((.......))))))))))).)))))..)(((..(.....)((((((.((((.((..(((.....))).)).)))).))))))...)))........ ( -42.10)
>consensus
GCUGUUGCGGCUGCUGCUCAAAUACCAAUCCCUGAUUGGUAGGUGGCGGCGGUGCUAAAGCCUCAGGAUUGUCCAGUUCACUGUCCUGCAGAAAAUGGAAGCGUCCUGUGCCCAAGACCU
(((...(((.((((((((....((((((((...))))))))...)))))))))))...)))(.((((((..((((.....(((.....)))....))))...)))))).).......... (-34.60 = -35.08 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:45 2006