| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,633,399 – 18,633,504 |
| Length | 105 |
| Max. P | 0.544106 |
| Location | 18,633,399 – 18,633,504 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.86 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -12.84 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18633399 105 - 23771897 GUGAAUGAAGAAGCGUGCACACUAACAGUGCAUUAUAAAUGAAAUGAA------------AACUAUGUAUUUGCAAAACAGUACAUACAUUAAACAAAAGUAUAUAAACC---AUUCGUU ..(((((.......((((((.......))))))...............------------....((((((.(((......))).))))))...................)---))))... ( -17.20) >DroSec_CAF1 6259 105 - 1 GUGAAUGAAGAAGCGUGCACACUAACAGUGCAUUAUAAAUGAAAUGAA------------AACUAUGUAUUUGCAAAACAGUACAUACAUUAAACAAAAGUAUAUAAACC---AUUCGUU ..(((((.......((((((.......))))))...............------------....((((((.(((......))).))))))...................)---))))... ( -17.20) >DroSim_CAF1 8020 105 - 1 GUGAAUGAAGAAGCGUGCACACUAACAGUGCAUUAUAAAUGAAAUGAA------------AACUAUGUAUUUGCAAAACAGUACAUACAUUAAACAAAAGUAUAUAAACC---AUUCGUU ..(((((.......((((((.......))))))...............------------....((((((.(((......))).))))))...................)---))))... ( -17.20) >DroEre_CAF1 5983 104 - 1 GCGAAUGGAGAAGCGUGCACACUAACAGUGCAUUAUAAAUGAAAUGAA------------AACUGUGUAUUUGCAAGAUAGUACAUACAUUAAACAA-AGUAUAUAAAGC---AUUCGAU .((((((.......((((((.......))))))...............------------....((((((.(((......))).)))))).......-...........)---))))).. ( -19.60) >DroAna_CAF1 5573 118 - 1 ACAAUUGAAGAAGCAUGCAUGCUAAU-GUGCAUUAUAAAAGGAAAGAACUAUCGUAGUUCAACUAUGUAUUUGCAAAAGCGUACAUACAUUAAACAAAA-UAUAAAAAAGUUCCUUAGUU ...........(((((((((......-)))))).....((((((.((((((...))))))...(((((((..((....)))))))))............-..........)))))).))) ( -21.60) >consensus GUGAAUGAAGAAGCGUGCACACUAACAGUGCAUUAUAAAUGAAAUGAA____________AACUAUGUAUUUGCAAAACAGUACAUACAUUAAACAAAAGUAUAUAAACC___AUUCGUU ...((((((.....((((((.......))))))...............................((((((.(((......))).))))))........................)))))) (-12.84 = -12.80 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:44 2006