Locus 6904

Sequence ID 3L_DroMel_CAF1
Location 18,624,220 – 18,624,324
Length 104
Max. P 0.918926
window11198

overview

Window 8

Location 18,624,220 – 18,624,324
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 92.21
Mean single sequence MFE -21.13
Consensus MFE -19.58
Energy contribution -19.58
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.93
SVM decision value 1.12
SVM RNA-class probability 0.918926
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18624220 104 + 23771897
UUUCUUUUAUCUUAUCGGUUAAUGUCUGCCUUUAAGUCGUAAAUUAUAUGCACUUUUGCAGGGUAAACUAAUAUUGCAAAGUGUAUGUUCUUGCAAAAUCAAUA
..........((((..(((........)))..))))..((((...(((((((((((.((((.((......)).)))))))))))))))..)))).......... ( -22.80)
>DroSec_CAF1 35948 104 + 1
UUUCUUUUAUCUUAUCGGUUAAUGCCAGCCUUUAAGUCGUAAAUUAUAUGCACUUUUGCAGGGUAAACUAAUAUUGCAAGGUGUAUGUUCUCGCAAAAUCAAUA
..........((((..((((......))))..))))..((.....(((((((((((.((((.((......)).)))))))))))))))....)).......... ( -20.30)
>DroSim_CAF1 36881 104 + 1
UUUCUUUUAUCUUAUCGGUUAAUGCCAGCCUUUAAGUCGUAAAUUAUAUGCACUUUUGCAGGGUAAACUAAUAUUGCAAAGUGUAUGUUCUCGCAAAAUCAAUA
..........((((..((((......))))..))))..((.....(((((((((((.((((.((......)).)))))))))))))))....)).......... ( -20.60)
>DroEre_CAF1 36358 103 + 1
UUUCU-GUAUCUUAUCGGUUAAUGUCUGCCCUUAAGUCGUAAAUUAUAUGCACUUUUGCGGGGUAAACUAAUAUCGCAAAGUGUUUGCUCUCGCAAAAUCAAUA
....(-((((((((..(((........)))..))))...........))))).(((((((((((((((..............)))))).)))))))))...... ( -22.04)
>DroYak_CAF1 36970 104 + 1
UUUCUUCUAUCUUAUCGGCUAAUGUCUGCCUUUAAGUCGUAAAUUAUAUGCACCUUUGCGGCGUAAACUAAUAACGCAAAGUGUUUGUUCUCGCAAAAUCAUAA
..........((((..(((........)))..))))..((.....(((.((((.((((((..((......))..)))))))))).)))....)).......... ( -19.90)
>consensus
UUUCUUUUAUCUUAUCGGUUAAUGUCUGCCUUUAAGUCGUAAAUUAUAUGCACUUUUGCAGGGUAAACUAAUAUUGCAAAGUGUAUGUUCUCGCAAAAUCAAUA
..........((((..(((........)))..))))..((.....((((((((.(((((((.((......)).)))))))))))))))....)).......... (-19.58 = -19.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:43 2006