| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,613,386 – 18,613,478 |
| Length | 92 |
| Max. P | 0.764019 |
| Location | 18,613,386 – 18,613,478 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.80 |
| Mean single sequence MFE | -16.65 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.02 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18613386 92 + 23771897 UGCUGCUUAACCGUUAUAGUGCCGACAUUUUAUUGCUGCAUCCUUGCAGUUUUUAUAGACCCAUCCACACAUGGCUUCGU-----------------CCCACAAUUCUU-- ..................(((..(((..(((((.((((((....))))))....))))).((((......))))....))-----------------).))).......-- ( -16.50) >DroVir_CAF1 34651 85 + 1 ------UUUACCGUUACAGCGCCAACAUUUUAUUGCUGCAUCCUUGCAGUUUUUAUAGACCCAUCCGCACUUGGUUUGCU-----------------CUCCCU-CUCCC-- ------...((((.....(((.......(((((.((((((....))))))....)))))......)))...)))).....-----------------......-.....-- ( -13.92) >DroSec_CAF1 25031 92 + 1 UGCUGCUUAACCGUUAUAGUGCCGACAUUUUAUUGCUGCAUCCUUGCAGUUUUUAUAGACCCAUCCACACAUGGCUUCGU-----------------CCCACAAUUUUU-- ..................(((..(((..(((((.((((((....))))))....))))).((((......))))....))-----------------).))).......-- ( -16.50) >DroEre_CAF1 25597 92 + 1 UGCUGCUCAGCCGUUAUAGUGCCGACAUUUUAUUGCUGCAUCCUUGCAGUUUUUAUAGACCCAUCCACACAUGGCUUCGU-----------------CCCACAAUUCUU-- ((..((..((((((....(((..((...(((((.((((((....))))))....)))))....))..)))))))))..))-----------------..))........-- ( -18.40) >DroYak_CAF1 25923 92 + 1 UGCUGCUCAAGCGUUAUAGUGCCGACAUUUUAUUGCUGCAUCCUUGCAGUUUUUAUAGACCCUUCCACACAUGGCUUCGU-----------------CCCACAAUUCUU-- .(((.....)))......(((..(((..(((((.((((((....))))))....))))).....(((....)))....))-----------------).))).......-- ( -18.00) >DroAna_CAF1 22559 111 + 1 UGUUAUUUAACUGUUGUGGUGCCAACAGUUUAUUGCUGCAUCCUUGCAGUUUUCAUAGACCCAUCCACACAUGCCUUUAUACACCUCCCCGCUCUCCCCCUCUAUCCUUUU ...........(((.((((........((((((.((((((....))))))....))))))....)))))))........................................ ( -16.60) >consensus UGCUGCUUAACCGUUAUAGUGCCGACAUUUUAUUGCUGCAUCCUUGCAGUUUUUAUAGACCCAUCCACACAUGGCUUCGU_________________CCCACAAUUCUU__ ..................(((.......(((((.((((((....))))))....)))))......)))........................................... (-11.30 = -11.02 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:29 2006