Locus 6897

Sequence ID 3L_DroMel_CAF1
Location 18,608,115 – 18,608,213
Length 98
Max. P 0.779009
window11180

overview

Window 0

Location 18,608,115 – 18,608,213
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.32
Mean single sequence MFE -21.13
Consensus MFE -11.47
Energy contribution -13.47
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.54
SVM decision value 0.55
SVM RNA-class probability 0.779009
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18608115 98 - 23771897
AGCAUACGGCCGAAAUUCAUAUUAAUUCUGCCAA-AAGUUUAAAGCUGUCAUCGACAGCAAUCGUCAAUUGGUCAACAUAUAGUCCAAUUAUUGGCUAG
(((....(((.(((...........))).)))..-.........((((((...))))))...((..((((((.(........).))))))..))))).. ( -22.10)
>DroSec_CAF1 19767 98 - 1
AGCAUAUGGCCGAAAUUCAUAUGUCUUCUGCCAA-AAGUUUAAAGCUGUCAUCGACAGCAAUCGUCAAUUGGUCAACACAUAGUCCAAUUAUUGGCUAG
.((((((((.......)))))))).....(((((-.........((((((...)))))).......((((((.(........).)))))).)))))... ( -26.60)
>DroSim_CAF1 19207 98 - 1
AGCAUAUGGCCGAAAUUCAUAUGUCUUCUGCCAA-AAGUUUAAAGCUGUCAUCGACAGCAAUCGUCAAUUGGUCAACAUAUAGUCCAAUUAUUGGCUAG
.((((((((.......)))))))).....(((((-.........((((((...)))))).......((((((.(........).)))))).)))))... ( -26.60)
>DroEre_CAF1 20512 98 - 1
AGCAUAAGCCCGAAACUCAUAUUUCUUCUGCCAA-AAGCUUAAAGCUGUCAUUGCCAGCAAUUGUCAAUUGGCCAACAUAUAGACCAAUUAUUGGCUAG
.((....))..((((......))))....(((((-.........((((.......)))).......((((((.(........).)))))).)))))... ( -16.50)
>DroYak_CAF1 20868 98 - 1
ACCAUAAGCCCGAAAUUCAUAUUUCUUCUGCCAAAAAGCUUAAAGCUGUCAUUGCCAGCAAUCGUCAAUUGGUCAACAUAU-GACCAAUUAUUGGCUAG
...........(((((....)))))....(((((..........((((.......)))).......(((((((((.....)-)))))))).)))))... ( -23.70)
>DroAna_CAF1 18291 74 - 1
---AUAUAACCAAA-CCCG------UGCACGGAA-AAGCUUUAAACUGUCAACGACAG--------------ACAACAUAUAGACUAAUAAUUGGCUAC
---......((((.-.(((------....)))..-..........(((((...)))))--------------...................)))).... ( -11.30)
>consensus
AGCAUAUGGCCGAAAUUCAUAUUUCUUCUGCCAA_AAGCUUAAAGCUGUCAUCGACAGCAAUCGUCAAUUGGUCAACAUAUAGACCAAUUAUUGGCUAG
.............................(((((..........((((((...)))))).......((((((.(........).)))))).)))))... (-11.47 = -13.47 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:26 2006