Locus 6894

Sequence ID 3L_DroMel_CAF1
Location 18,599,649 – 18,599,739
Length 90
Max. P 0.754814
window11175

overview

Window 5

Location 18,599,649 – 18,599,739
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.99
Mean single sequence MFE -22.50
Consensus MFE -17.09
Energy contribution -16.65
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -1.27
Structure conservation index 0.76
SVM decision value 0.49
SVM RNA-class probability 0.754814
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18599649 90 - 23771897
---------UCGCCCCUCGUUUAUUACCAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAA----AA---------------AUCAGUGAAUGGUCUUAA--GCACCU
---------.........(((((..((((((.((.((((....))))((((((....))))))..........----..---------------....)).))))))..)))--)).... ( -22.20)
>DroPse_CAF1 12852 118 - 1
CCCGGCUCUUUGGCACUCGUUUAAGGCUAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAAGAAAAAGGAGAACAAAAA--AAUCAGUGAAUGGUCUUGAGAGCACCU
....((((((.(((.(((.(((.(((((......))))).....(((((((((....)))))).))).........))).)))........--...((.....)))))..)))))).... ( -26.90)
>DroEre_CAF1 12037 90 - 1
---------CCACCCCUCUUUUAAUGCCAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAA----AA---------------AUCAGUGAAUGGUCUUAA--GCACCU
---------..........(((((.((((((.((.((((....))))((((((....))))))..........----..---------------....)).)))))).))))--)..... ( -18.80)
>DroYak_CAF1 12217 89 - 1
---------UC-CCCCUCUUUUAAUGCCAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAA----AA---------------AUCAGUGAAUGGUCUUAA--GCACCU
---------..-.......(((((.((((((.((.((((....))))((((((....))))))..........----..---------------....)).)))))).))))--)..... ( -18.80)
>DroAna_CAF1 10118 102 - 1
------------UCUCUCGUUUAAUGCUAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAA----AAGGAGAAAAAAAAUACAUCAGUGAAUGGUCUUAA--GCACCU
------------(((((..(((((((((.......((((....))))((((((....)))))))).)))))))----..)))))....................((((....--).))). ( -21.40)
>DroPer_CAF1 13377 117 - 1
CCCGGCUCUUUGGCACUCGUUUAAGGCUAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAAGAAAAAGGAGAACAAA-A--AAUCAGUGAAUGGUCUUGAGAGCACCU
....((((((.(((.(((.(((.(((((......))))).....(((((((((....)))))).))).........))).)))......-.--...((.....)))))..)))))).... ( -26.90)
>consensus
_________UCGCCCCUCGUUUAAUGCCAUUAACAGCUUGUCAAAGCCAUGGCCAAAGUCGUGAGUUAUUAAA____AA_______________AUCAGUGAAUGGUCUUAA__GCACCU
....................((((.((((((.((.((((....))))((((((....))))))...................................)).)))))).))))........ (-17.09 = -16.65 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:22 2006