Locus 6893

Sequence ID 3L_DroMel_CAF1
Location 18,599,100 – 18,599,191
Length 91
Max. P 0.650185
window11174

overview

Window 4

Location 18,599,100 – 18,599,191
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 75.80
Mean single sequence MFE -23.45
Consensus MFE -12.18
Energy contribution -13.85
Covariance contribution 1.67
Combinations/Pair 1.26
Mean z-score -1.75
Structure conservation index 0.52
SVM decision value 0.24
SVM RNA-class probability 0.650185
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18599100 91 + 23771897
CUGCAACGGACU-----GUAAGUGUGCAGAUAUGAGAACAUGUGUAUGCAUUUAU---UUCUCUUCAUAUGGGGGUGUCGUUAAGCACUUGAGUUGCAA
.(((((((((..-----((((((((..(.(((((....))))).)..))))))))---.)))..........((((((......))))))..)))))). ( -25.30)
>DroSec_CAF1 10766 87 + 1
UUGCAACGUACU-----AUAUAUGUGCAGAUAUGAGUACAU----AUACAUUUAU---UUCUGUUCAUAUGGGGGUGUCGUUAAGCACUUGAGUUGCAA
.((((((.....-----.((((((.(((((.((((((....----....))))))---.))))).)))))).((((((......))))))..)))))). ( -27.10)
>DroSim_CAF1 10550 91 + 1
UUGCAACGUACU-----AUAUAUGUGCAGAUAUGAGAACAUAUGUAUACAUUUAU---UUCUGUUCAUAUGGGGGUGUCGUUAAGCACUUGAGUUGCAA
.((((((.....-----.((((((.(((((.((((......(((....)))))))---.))))).)))))).((((((......))))))..)))))). ( -24.50)
>DroEre_CAF1 11485 91 + 1
CUCCAACGAACUGAUUUGCAUGUGUGCAGAUAUGAGGACAC----AUAUUUUUAU---UUCUGUUCU-AUGGGGGUGUCGUUAAGCACUUGAGUUGCAA
....(((((....((((.((((.(.(((((.(((((((...----...)))))))---.))))).))-))).)))).)))))..((((....).))).. ( -19.60)
>DroYak_CAF1 11617 92 + 1
CGGUAACGAACUGCAUUGUAUGUGUGCAUAUAUGAGGACAU----AUAUCUUUAU---UUCUGUUCUUGUGGGGGUGUCGUUAAGCACUUGAGUUGCAA
..(((((...(..(..((((((....)))))).(((((((.----(((....)))---...))))))))..)((((((......))))))..))))).. ( -22.90)
>DroAna_CAF1 9767 81 + 1
CUGCAUUGCACU-----GUAUCU------AUAUGA---UAU----AUAGCUUUAGGAGGUAUUGCAAUGUGUAGGUGUCGCUGAGCACUUGAGUUGCAA
((.((..((..(-----(((((.------....))---)))----)..))..).).))...(((((((...(((((((......))))))).))))))) ( -21.30)
>consensus
CUGCAACGAACU_____GUAUGUGUGCAGAUAUGAGAACAU____AUACAUUUAU___UUCUGUUCAUAUGGGGGUGUCGUUAAGCACUUGAGUUGCAA
.((((((...........((((((.(((((.............................))))).)))))).((((((......))))))..)))))). (-12.18 = -13.85 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:21 2006