Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,598,602 – 18,598,699 |
Length | 97 |
Max. P | 0.903906 |
Location | 18,598,602 – 18,598,699 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.58 |
Mean single sequence MFE | -37.66 |
Consensus MFE | -24.31 |
Energy contribution | -25.56 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.09 |
Mean z-score | -2.00 |
Structure conservation index | 0.65 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18598602 97 - 23771897 CAGGUUAACUGAUGAGGAGGGGGGGGGGGGGGGGU--GAGACAAAGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACCUUCCCAUCGACGCCAC (((.....))).......((.(..(..((((((((--(...(....)....(((((((.............))))))).)))))))))..)..).)).. ( -37.92) >DroSec_CAF1 10278 85 - 1 CAGGUUAAA--------AGGGGGGGG--U----CUUGGUGCCAAAGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACCUUCCCCUCGACGCCAC ..(((....--------(((((((((--(----(...((.((....)).))(((((((.............)))))))).))))))))))....))).. ( -38.02) >DroSim_CAF1 10021 90 - 1 CAGGUUAAA--------AGGGGGAGGGGGCUUGCUUAGAGCCAAAGGGGAUGGGGUGGGGUCCAAGUAUAACC-CCCCGCACCUUCCCCUCGACGCCUC .((((....--------(((((((((.(((((.....)))))........((.((.(((((.........)))-)))).)))))))))))....)))). ( -41.30) >DroEre_CAF1 10995 77 - 1 CAGGUUAAA--------UGGGUG--------------GAGCCGAGGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACUUUCCCCGCCGCGCCAC .........--------...(((--------------(.((.(.((((((((((((((.............))))))))....)))))).).)).)))) ( -33.42) >consensus CAGGUUAAA________AGGGGGGGG__G____CU__GAGCCAAAGGGGAUGGGGUGGGGUCCAAGUAUAACCACCCCGCACCUUCCCCUCGACGCCAC ..(((............(((((((((..............((....))(.((((((((.............))))))))).)))))))))....))).. (-24.31 = -25.56 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:20 2006