Locus 6891

Sequence ID 3L_DroMel_CAF1
Location 18,586,690 – 18,586,791
Length 101
Max. P 0.610023
window11172

overview

Window 2

Location 18,586,690 – 18,586,791
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 85.57
Mean single sequence MFE -42.70
Consensus MFE -33.03
Energy contribution -32.50
Covariance contribution -0.53
Combinations/Pair 1.22
Mean z-score -2.09
Structure conservation index 0.77
SVM decision value 0.16
SVM RNA-class probability 0.610023
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18586690 101 + 23771897
UGUAUCGUAGCUGUGCUCCUUCACAUAGCUUUGAUAGUGCCGACAACCCGUCUCGGACAUGACGGCGCUGCUGGCGUCGGCGCUAGCGUUGG------CUUGGGCGC
..(((((.(((((((........))))))).)))))..((((((...(((((........)))))....(((((((....))))))))))))------)........ ( -42.90)
>DroSec_CAF1 24862 101 + 1
UGUAUCGUAGCUGUGCUCCUUCACAUAGCUUUGAUAGUGCCGACAACCCGUCUCGGACAUGACGGCGCUGCUGGCGUCGGCGCUAGCUUUGG------CUUGGGCGC
..(((((.(((((((........))))))).)))))(((((......(((((........))))).((((((((((....)))))))...))------)...))))) ( -42.20)
>DroSim_CAF1 24952 101 + 1
UGUAUCGUAGCUGUGCUCCUUCACAUAGCUUUGAUAGUGCCGACAACCCGUCUCGGACAUGACGGCGCUGCUGGCGUCGGCACUAGCUUUGG------CUUGGGCGC
....(((.(((((((........))))))).)))((((((((((...(((((........))))).((.....))))))))))))((((...------...)))).. ( -41.80)
>DroEre_CAF1 22515 95 + 1
UGUAUCGUAGCUGUGCUCCUUCACGUAGCUCUGGUAGUGCCGACAGCCCGUCUCGGACAUGACGGCGCUGCUGGCGUCGGCGUUGGCGUUGGC------------GC
..(((((.(((((((........))))))).)))))((((((((((((((((........))))).)))((..(((....)))..))))))))------------)) ( -44.00)
>DroYak_CAF1 24465 107 + 1
UGUAUCGUAGCUGUGCUCCUUUACGUAGCUCUGGUAGUGCCGACAGCCCGUCUCGGACAUGACGGCGCUGCUGGCGUCGGCGUUGGCGUUGGCGUUAGCUUUGACGC
..(((((.(((((((........))))))).)))))..((((.(((((((((........))))).)))).))))(((((.(((((((....))))))).))))).. ( -44.60)
>DroAna_CAF1 21057 93 + 1
UGUAUCAUAGCUGUGCUCCUUCACGUAGCUCUGAUAAUGCCGGCAGCCCGUCUCUGACAUGACAGCGCUGCUGGCGUCGGCUGUGCUGCUGGC--------------
..(((((.(((((((........))))))).)))))..((((((((((.(((........))).).)))))))))((((((......))))))-------------- ( -40.70)
>consensus
UGUAUCGUAGCUGUGCUCCUUCACAUAGCUCUGAUAGUGCCGACAACCCGUCUCGGACAUGACGGCGCUGCUGGCGUCGGCGCUAGCGUUGG______CUUGGGCGC
..(((((.(((((((........))))))).)))))((((((((...(((((........))))).((.....))))))))))........................ (-33.03 = -32.50 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:18 2006