| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,586,373 – 18,586,463 |
| Length | 90 |
| Max. P | 0.826708 |
| Location | 18,586,373 – 18,586,463 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 79.82 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -17.71 |
| Energy contribution | -17.84 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18586373 90 - 23771897 ----------GACAACGCACCGUUCUCACCACAAAGCAGUGCGGACUUUUUUGAAUGGGUAAAGCAUGCAACAGCUGUUUUAACAGCUGACAAAUUGGCA ----------((.((((...)))).)).(((....(((.(((..((((........))))...))))))..(((((((....)))))))......))).. ( -23.80) >DroSec_CAF1 24543 90 - 1 ----------GACAACGCACCGUUCUCACCACAAGGCAGUGCGGACUUUUUGGAAUGGGUGAAGCAUGGAACAGCUGUUUUAACAGCUGACAAAUGAGCA ----------......((.((((.((((((.(((((.(((....)))))))).....)))).)).))))..(((((((....)))))))........)). ( -27.10) >DroSim_CAF1 24633 90 - 1 ----------GACACCGCACCGUUCUCACCACAAAGCAGUGCAGGCUUUUUGGAAUGGGUGAAGCAUGGAACAGCUGUUUUAACAGCUGACAAAUGAGCA ----------......((.((((.((((((.(((((.(((....)))))))).....)))).)).))))..(((((((....)))))))........)). ( -27.40) >DroEre_CAF1 22200 92 - 1 UGGUAGUGGUGACAACACACUGUUCUCACCGCGAAGCUGUGC-------UUGGAAUAUGUGAAU-AUGCAACAGCUGUUUCAACAGCUGACAAACGUACA .(((.(((((((.(((.....))).)))))))...)))((((-------(((..((((....))-)).)))(((((((....)))))))......)))). ( -29.60) >consensus __________GACAACGCACCGUUCUCACCACAAAGCAGUGCGGACUUUUUGGAAUGGGUGAAGCAUGCAACAGCUGUUUUAACAGCUGACAAAUGAGCA ...............(((.((((((((..(((......)))..)).......)))))))))..........(((((((....)))))))........... (-17.71 = -17.84 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:16 2006