Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,067,543 – 2,067,728 |
Length | 185 |
Max. P | 0.994846 |
Location | 2,067,543 – 2,067,649 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -16.30 |
Energy contribution | -17.97 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.82 |
Structure conservation index | 0.69 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2067543 106 + 23771897 CUGUUCCUCGAUGAGCUCUUCUUCUGGAGCCACGUCUUCUGGAACUUCCUCUACUGGAACUUCCUCUACUGGAACUUCCUCUCCUGGCAAUUCCUCAACAUCAGUC ..(((((..((((.(((((......)))))..))))....)))))..((......((((.((((......)))).))))......))................... ( -26.80) >DroSec_CAF1 124290 92 + 1 NNNNNNNNNNNUGGGCUCUUCUUCUGGAGCCACGUCUUCUGGAACUUC--------------UCUCUAGUGGAACUUCCUCUGCUGGCAAUUCCUCAACAUCAGUC .............((((((......)))))).........((((....--------------...((((..((......))..))))...))))............ ( -20.10) >DroSim_CAF1 127187 106 + 1 CUGUUCCUCGAUGGGCUCUUCUUCUGGAGCCACCUCUUCUGGAACUUCCUCAACUAUAACUUCCUCUGCUGGAACUUCCUCUGCUGGCAAUUCCUCAACAUCAGUC .........((((((((((......)))))).((......((((.((((.....................)))).))))......))...........)))).... ( -24.30) >consensus CUGUUCCUCGAUGGGCUCUUCUUCUGGAGCCACGUCUUCUGGAACUUCCUC_ACU__AACUUCCUCUACUGGAACUUCCUCUGCUGGCAAUUCCUCAACAUCAGUC .........((((((((((......))))))..(((....((((.((((.....................)))).))))......)))..........)))).... (-16.30 = -17.97 + 1.67)
Location | 2,067,543 – 2,067,649 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -16.95 |
Energy contribution | -17.40 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2067543 106 - 23771897 GACUGAUGUUGAGGAAUUGCCAGGAGAGGAAGUUCCAGUAGAGGAAGUUCCAGUAGAGGAAGUUCCAGAAGACGUGGCUCCAGAAGAAGAGCUCAUCGAGGAACAG ..((((((((..((((((.((......)).))))))......((((.((((......)))).))))....)))))(((((........)))))..........))) ( -30.10) >DroSec_CAF1 124290 92 - 1 GACUGAUGUUGAGGAAUUGCCAGCAGAGGAAGUUCCACUAGAGA--------------GAAGUUCCAGAAGACGUGGCUCCAGAAGAAGAGCCCANNNNNNNNNNN .....(((((..((((((.((......)).)))))).((.(((.--------------....))).))..)))))(((((........)))))............. ( -19.30) >DroSim_CAF1 127187 106 - 1 GACUGAUGUUGAGGAAUUGCCAGCAGAGGAAGUUCCAGCAGAGGAAGUUAUAGUUGAGGAAGUUCCAGAAGAGGUGGCUCCAGAAGAAGAGCCCAUCGAGGAACAG ..((..((((..((((((.((......)).))))))))))..)).................(((((....((.(.(((((........)))))).))..))))).. ( -28.20) >consensus GACUGAUGUUGAGGAAUUGCCAGCAGAGGAAGUUCCAGUAGAGGAAGUU__AGU_GAGGAAGUUCCAGAAGACGUGGCUCCAGAAGAAGAGCCCAUCGAGGAACAG ..(((.((..((....))..)).))).((((.((((.....................)))).)))).......(.(((((........))))))............ (-16.95 = -17.40 + 0.45)
Location | 2,067,609 – 2,067,728 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 85.38 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -17.32 |
Energy contribution | -18.60 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.24 |
Mean z-score | -1.82 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2067609 119 - 23771897 CUGCUGAGGACCAGCAACUAGUCGUUGAAGAGAGCAAAAAGGUUAAAAAAGUAAAGAAACCAACUGGGACAGUUGAAAAGACUGAUGUUGAGGAAUUGCCAGGAGAGGAAGUUCCAGUA .(((((.....))))).(((((.(((......))).....((((.............)))).)))))..(((((.....))))).......((((((.((......)).)))))).... ( -26.22) >DroSec_CAF1 124342 119 - 1 CUGCUGAGGACCAGCAACUAGUCGUUGAAGAGAGCAAAAAGGUUAAAAAAGUAAAGAAACCAACUCGGAAAGUUGAAAAGACUGAUGUUGAGGAAUUGCCAGCAGAGGAAGUUCCACUA ((((((.....((((........))))......((((...((((.............))))..(((((..((((.....))))....)))))...)))))))))).((.....)).... ( -26.12) >DroSim_CAF1 127253 119 - 1 CUGCUGAGGACCAGCAACUAGUCGUUGAAGAGAGCAAAAAGGUUAAAAAAGUAAAGAAACCAACUCGGAAAGUUGAAAAGACUGAUGUUGAGGAAUUGCCAGCAGAGGAAGUUCCAGCA ((((((.....((((........))))......((((...((((.............))))..(((((..((((.....))))....)))))...)))))))))).((.....)).... ( -26.12) >DroEre_CAF1 128538 119 - 1 CUGUUGAGAAGCAGCAAUCAGUUGUUGAAGAAAGCGAAAAGGUUAAAAAAGUAAAGAAACCAACACGAACGGUUGAAAAGCUUGAUGUCCAGGAACUGCCAGAAGAGGAUGUUCCGGAA ..((..((......(((((..(((((......)))))...((((.............)))).........))))).....))..)).(((.(((((..((......))..)))))))). ( -25.12) >DroYak_CAF1 122697 109 - 1 CUGCUGACG---------UUGUUGUCGAAGAGAGCAAACAGGUUAAAAAGGUAAAGAAACCAACUCGAACAGUUGAAAAGACUGAUGUUGAGGAUCUGCCAGUAGAGGAAGUUCCAAA- ((((((...---------(((((.((...)).))))).((((((.....(((......)))..(((((.(((((.....)))))...))))))))))).)))))).((.....))...- ( -30.50) >consensus CUGCUGAGGACCAGCAACUAGUCGUUGAAGAGAGCAAAAAGGUUAAAAAAGUAAAGAAACCAACUCGGACAGUUGAAAAGACUGAUGUUGAGGAAUUGCCAGCAGAGGAAGUUCCAGAA ((((((.....((((........))))......(((....((((.............))))..(((((.(((((.....)))))...)))))....))))))))).((.....)).... (-17.32 = -18.60 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:36 2006