Locus 6888

Sequence ID 3L_DroMel_CAF1
Location 18,581,620 – 18,581,726
Length 106
Max. P 0.867558
window11167

overview

Window 7

Location 18,581,620 – 18,581,726
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.02
Mean single sequence MFE -27.07
Consensus MFE -15.61
Energy contribution -16.70
Covariance contribution 1.09
Combinations/Pair 1.41
Mean z-score -1.83
Structure conservation index 0.58
SVM decision value 0.86
SVM RNA-class probability 0.867558
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18581620 106 + 23771897
CUCCCAGCUGAUAGGUGACUUCUUAAUCAUCUCAAUGGGUGCCUUACAGAAUGGACAAUUGCGAAAGUCCAUAAGGAAAAACUCCUAGCAAGGAAGAGAAAAAAGA
..((((..(((..(((((........)))))))).))))..((((.(...((((((..........)))))).((((.....)))).).))))............. ( -24.00)
>DroSec_CAF1 19763 106 + 1
CUUCCAGCUGAUAGGUGACUUCUUAAUCAUCUCAAUGGGGGCAUUACAGAAUGGACAAGAGCGCUUGUCCAUAAGGAAAAAAUCCUAGUAAGGAAGAGAAAUAAAA
(((((.(((..(((((((........))))))....)..))).((((...(((((((((....))))))))).((((.....)))).))))))))).......... ( -30.70)
>DroSim_CAF1 20025 106 + 1
CUUCCAGCUGAUUGGUGACUUCUUAAUCAUCUCAAUGGGGGCAUUACAGAAUGGACAAGAGCGCUUGUCCAUAAGGAAAAAAUCCUAGUAAGGAAGAUAAAUAAAA
(((((.(((((((((.(....)))))))).(((....))))).((((...(((((((((....))))))))).((((.....)))).))))))))).......... ( -30.50)
>DroEre_CAF1 17123 106 + 1
CUCCCUGCUGAUAGGUGACUUCUUAAUCAGCUCAAGAGGGGCAUUGCAGAAUGGACAGCCGCGCUUAUCCAUAAGAUAAAACUCCUAGUAAGGCAGGAAAUUAAUA
...((((((..((((.(...(((((....((((.....)))).........((((.(((...)))..))))))))).....).))))....))))))......... ( -27.30)
>DroYak_CAF1 18921 103 + 1
CUCCCAGCUGAUAGGCGACUUCUUAAUCAUCUCAAUGGGGGCAUUGCAGAAUGGACAGGAGCGGUUAUCCAUAAGGAAAAACUCCUAGUAAGGAAAAAAG-UAA--
.(((..((((((((.((.(((((...(((((((((((....))))).)).))))..))))))).)))))....((((.....)))))))..)))......-...-- ( -26.30)
>DroAna_CAF1 15803 105 + 1
UUCCCAGCUGAGAUUCGACGGUUUGAUCAGACUGAUGGGUGCUACGCAAUAAGGGCACUGCUGGAAGUCCAUUAGAAACGCUUCCUAUAAAGCAAAACGA-GAAUA
...(((((.......((.((((((....)))))).))((((((..........)))))))))))...............((((......)))).......-..... ( -23.60)
>consensus
CUCCCAGCUGAUAGGUGACUUCUUAAUCAUCUCAAUGGGGGCAUUACAGAAUGGACAAGAGCGCUUGUCCAUAAGGAAAAACUCCUAGUAAGGAAGAAAAAUAAAA
((((((..(((..(((((........)))))))).)))))).........(((((((((....)))))))))..........((((....))))............ (-15.61 = -16.70 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:13 2006