| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,575,204 – 18,575,310 |
| Length | 106 |
| Max. P | 0.604352 |
| Location | 18,575,204 – 18,575,310 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -28.14 |
| Consensus MFE | -14.48 |
| Energy contribution | -16.01 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18575204 106 - 23771897 ------------GUUACAAC--AUACCUUCUCCAAUGGCUUCUUUAAAGUAUUCGUGCCAUUUUGGUAAAUCCUCGUGCGUGCGUCUUAGCAGUGAAAAUGCAUUUAUGGGAUUUGAAAC ------------........--.........((((((((.................)))))..)))(((((((.((((.((((((.((.......)).)))))).))))))))))).... ( -22.43) >DroPse_CAF1 10141 106 - 1 ------------AUUAUUCC--UUACCCCUUCCCACAGUCGUAUUUAUGUAGUGGUGCCAUUUGGGCCAAUCCUGAUGCGUGCGUCUCAUCAGUCCAAAGGCAUUCAAGGGAUUGGAUAC ------------.....(((--....(((((.((((...(((....)))..))))((((.(((((((.......((((....))))......)))))))))))...)))))...)))... ( -31.52) >DroSec_CAF1 13265 101 - 1 -----------------AAC--UUACCUUCUCCCAUGGCCUCUUUAAAAUAGGCGUGCCAUUUUGGUAAAUCCUCGUGGGUGCGUCUUAACAGUGAAAAGGCAUUUAUGGGAUUUGAAAC -----------------...--........(((((((((((.((((....(((((..((.....((.....)).....))..)))))......)))).))))...)))))))........ ( -32.10) >DroSim_CAF1 13513 120 - 1 AACUAGUUACUAGUUACAACAGUUACCUUCUCCCAUGGCCUCUUUAAAGUAGGCGUGCCAUUUUGGUAAAUCCUCGUGGGUGCGUCUUAACAGUGAAAAGGCAUUUAUAGGAUUUGAAAC ((((((...))))))....(((...(((.........((((.((((..(((((((..((.....((.....)).....))..)))))..))..)))).))))......)))..))).... ( -30.26) >DroEre_CAF1 10650 106 - 1 ------------AUUACUAC--AUACCCUUUCCAAUGGCCUCUCUAAAAUAGGCGUGCCAUUUUGGCAAAUCCUCGUGGGUACGUCUCAAAAGUGAAAAGGCAUUUAUGGGAUUCGAAAC ------------........--.(((((.........((((.........)))).((((.....)))).........))))).((((((.(((((......))))).))))))....... ( -25.20) >DroYak_CAF1 12458 106 - 1 ------------GCUUUUAC--AUACCCUUUCCAAUGUCCUCUUUAAAGAAGGCGUGCCAUUUAGGCAAAUCUUUAUGGAUUCGCCUUAAAAGUGAAAAGGCAUUUAUUGGAUUCGAAAC ------------........--........(((((((.(((.((((...((((((..((((..(((....)))..))))...)))))).....)))).)))....)))))))........ ( -27.30) >consensus ____________GUUACAAC__AUACCCUCUCCAAUGGCCUCUUUAAAGUAGGCGUGCCAUUUUGGCAAAUCCUCGUGGGUGCGUCUUAACAGUGAAAAGGCAUUUAUGGGAUUUGAAAC .........................(((.........((((.((((....(((((((((((...((.....))..))).))))))))......)))).))))......)))......... (-14.48 = -16.01 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:12 2006