Locus 6886

Sequence ID 3L_DroMel_CAF1
Location 18,566,498 – 18,566,618
Length 120
Max. P 0.588604
window11165

overview

Window 5

Location 18,566,498 – 18,566,618
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.55
Mean single sequence MFE -32.03
Consensus MFE -21.34
Energy contribution -23.22
Covariance contribution 1.88
Combinations/Pair 1.07
Mean z-score -2.27
Structure conservation index 0.67
SVM decision value 0.11
SVM RNA-class probability 0.588604
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18566498 120 - 23771897
AUUACGAUGAUAAUGUCAGUCCAGAAGUUCUUAAAAUUAAACUUUGGAACUACCCGAACCUGUUGGAAUCCCUAGUGGAGGCCAACAAGGGACUUGGUAAUAUUCGUCGUUGUAUAAGAA
..((((((((((((((....(((..(((((((..........(((((......)))))..((((((..(((.....)))..))))))))))))))))..))))).)))))))))...... ( -34.50)
>DroSec_CAF1 4641 115 - 1
AUUACGAUGAUAAUCUCAGUCCUGAAGUUCUCAAAAUUAAACUUUGGAACUACCCGAACCUUUUGGAAUCCCUAGUAGAGGCCAACAAGGGACUUGGUAAUAUUCGUCGUU-----AAAA
...(((((((....((.((((((..(((((.((((.......))))))))).......(((((.((....))....))))).......)))))).))......))))))).-----.... ( -28.50)
>DroSim_CAF1 4802 115 - 1
AUUACGAUGAUAAUCUCAGUCCUGAAGUUCUCAAAAUUAAACUUUGGAACUACCCGAACCUUUUGGAAUCCCUAGUGGAGGCCAACAAGGGACUUGGUAAUAUUCGUCGUU-----AAAA
...(((((((....((.(((((...(((((.((((.......)))))))))........(((((((..(((.....)))..)))).)))))))).))......))))))).-----.... ( -31.70)
>DroEre_CAF1 2714 114 - 1
AUUACGAGAAUUAUCUUAGUCCUGAGGAGCUCAAAAUUAAACUUUGGAACUACCCGAAUCUGUUGGAAUCCCUGGUGGAGGCCAACAAGGGUCUUGGUAAUAUUCGUCAUU-----AAA-
...(((((.((((((.((((((.(((...............))).)).))))(((.....((((((..(((.....)))..)))))).)))....)))))).)))))....-----...- ( -30.06)
>DroYak_CAF1 4366 115 - 1
ACUACGGGGAUUAUCUCAGUCCAGAGGAGCUUAAAAUGAAACUUUGGAACUACCCGAACCUGCUGGAAGCCCUGGUGGAGGCCAACAAGGGACUUGGUAAUUUUCGUCGUU-----AAAA
((.(((..(((((((..(((((..(((.((((..........(((((......)))))((....)))))))))(((....)))......))))).)))))))..))).)).-----.... ( -35.40)
>consensus
AUUACGAUGAUAAUCUCAGUCCUGAAGUUCUCAAAAUUAAACUUUGGAACUACCCGAACCUGUUGGAAUCCCUAGUGGAGGCCAACAAGGGACUUGGUAAUAUUCGUCGUU_____AAAA
...(((((((....((.(((((....................(((((......)))))(.((((((..(((.....)))..)))))).)))))).))......))))))).......... (-21.34 = -23.22 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:10 2006