Locus 6884

Sequence ID 3L_DroMel_CAF1
Location 18,558,128 – 18,558,248
Length 120
Max. P 0.906542
window11162

overview

Window 2

Location 18,558,128 – 18,558,248
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -58.37
Consensus MFE -53.74
Energy contribution -54.63
Covariance contribution 0.90
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.92
SVM decision value 1.05
SVM RNA-class probability 0.906542
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18558128 120 + 23771897
AGCCGUUGCACUCGCGGAAGUGCUUCAGGUAGGCGGAGCGCAGACUGGCAAGCUCUGCCUCGCUGGUGGAGCAGCCGGUAGUGGCGGUCAGGCCCUCCUCCUCCUGAAGCUGCAGGGGUA
.(((.(((((...((....))((((((((.(((.((((.((...(((((..((((..((.....))..)))).((((....)))).))))))).)))).)))))))))))))))).))). ( -66.50)
>DroSec_CAF1 181911 120 + 1
AGCCGUUGCACUCGCGGAAGUGCUUCAGGUAGGCGGAGCGUAGGCUGGCAAGCUCUGACUCGUUGGUGGAGCAGCCGGUAGUGGCGGUCAGCCCCUCCUCCUCCUGAAGCUGCAGGGGUA
.(((.(((((...((....))((((((((.(((.((((.(..(((((((..(((((..(.....)..))))).((((....)))).)))))))))))).)))))))))))))))).))). ( -64.20)
>DroEre_CAF1 178175 120 + 1
AGCCGUUGCACUCUCGGAAGUGCUUCAGGUAGGCGGAACGCAGGCUGGCAAGCUCCGACUCGCUGGUGGAGCAGCCGGAAGUGGUGGUCAGUCCCUCAUCCUCUUGCAGCUGCAGGGGUA
.(((.(((((....(....).(((....(((((.(((.....(((((((..(((((.(((....)))))))).((((....)))).))))))).....))).))))))))))))).))). ( -44.40)
>consensus
AGCCGUUGCACUCGCGGAAGUGCUUCAGGUAGGCGGAGCGCAGGCUGGCAAGCUCUGACUCGCUGGUGGAGCAGCCGGUAGUGGCGGUCAGCCCCUCCUCCUCCUGAAGCUGCAGGGGUA
.(((.(((((...((....))((((((((.(((.((((....(((((((..((((((.(.....).)))))).((((....)))).))))))).)))).)))))))))))))))).))). (-53.74 = -54.63 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:07 2006