Locus 6881

Sequence ID 3L_DroMel_CAF1
Location 18,547,843 – 18,547,937
Length 94
Max. P 0.632520
window11158

overview

Window 8

Location 18,547,843 – 18,547,937
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 67.36
Mean single sequence MFE -37.41
Consensus MFE -12.66
Energy contribution -13.72
Covariance contribution 1.06
Combinations/Pair 1.30
Mean z-score -1.84
Structure conservation index 0.34
SVM decision value 0.20
SVM RNA-class probability 0.632520
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18547843 94 + 23771897
CGG-UCAGGGUGACGGUGAUUCUGGACAGUUGGUUUAAGCACCUGUCAACCCGUCACGAAGUG-U--------ACCCA--------------GUUACCAG-GACUGUGG-ACUGGUCAAA
.(.-.(((.(((((((.(......(((((.((.......)).)))))..))))))))......-.--------.((((--------------(((.....-))))).))-.)))..)... ( -32.50)
>DroSec_CAF1 171875 113 + 1
CGG-CCAGGGUGACGGUGAUUCUGUGCACUUGGUUUAAGCACCUGUCAACCAGUCACCCAGUG-CCCAGUACCACCCAGUUACCAACUG---GUUACCAG-GGCUGUGG-ACUGGUCAAA
.((-((.(((((((((((((...((((...........))))..))).))).)))))))(((.-((((((.((..(((((.....))))---)......)-))))).))-)))))))... ( -44.30)
>DroSim_CAF1 159656 109 + 1
CGG-CCAGGGUGACGGUGAUUCUGGGCACUUGGUUUAAGCACCUGUCAACCAGUCACCCAGUG-CCCAGUACCACCCAGUUACCA-------GUUACCAG-GGCUGUGG-ACUGGUCAAA
.((-((((((((((((((...(((((((((.(((........(((.....)))..))).))))-)))))...))))..)))))).-------....(((.-.....)))-.))))))... ( -46.10)
>DroEre_CAF1 168513 115 + 1
UAG-UCAGGGUGACGCUGAUUCUGGGCACUUGGCUUAAGCACCUGUCAUCCAGUCACCCAGUCACCCA--AUCACCCAGUUGCCAGUUGCCAGUUACCAG-GUCUGUGG-ACUGGUCAAA
...-...(((((((.......(((((.((...((....))....))..))))).......))))))).--.....((((((..(((..(((........)-)))))..)-)))))..... ( -36.14)
>DroYak_CAF1 174226 97 + 1
UAG-CCAGGGUGACGGUGAUUCUGGGCAGUUGGCUUAAGCACCUGUCAUCCCGUCACCCAGCCAUCCA------C--------------CCAGUUACCAG-GGAUGUGG-ACUGGUCAAA
...-...(((((((((.(((....(((((...((....))..))))))))))))))))).((((((((------(--------------((........)-))...)))-).)))).... ( -40.20)
>DroPer_CAF1 176964 80 + 1
UGGAGCGGUGGGACGGUGGGGCUCUGAGCCUGGUUUAAUCACCUGUCAGCCAGCUAC----------------------------------------GAACGGCUGAAACGCCAGUGGAA
...((((((..(((((((((((.....))))........)))).))).))).)))..----------------------------------------...(.((((......)))).).. ( -25.20)
>consensus
CGG_CCAGGGUGACGGUGAUUCUGGGCACUUGGUUUAAGCACCUGUCAACCAGUCACCCAGUG_CCCA_____ACCCA______________GUUACCAG_GGCUGUGG_ACUGGUCAAA
.......(((((((((((((.....((...........))....)))).)).)))))))..........................................(((((......)))))... (-12.66 = -13.72 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:03 2006