Locus 688

Sequence ID 3L_DroMel_CAF1
Location 2,065,511 – 2,065,631
Length 120
Max. P 0.565843
window1052

overview

Window 2

Location 2,065,511 – 2,065,631
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -33.47
Consensus MFE -15.68
Energy contribution -15.47
Covariance contribution -0.22
Combinations/Pair 1.44
Mean z-score -2.35
Structure conservation index 0.47
SVM decision value 0.06
SVM RNA-class probability 0.565843
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2065511 120 - 23771897
AAGAGGGCAUAGACAAGGUGGCCGAUGAGGAGCUUAUAGAGGACCAGCAGUUAAUCCAAAACCAGCAGGAGACGACUACCUCUGAGGUUAUCGGCCAGGAGCGCAAGCUUGUCAAGAAGA
...........(((....(((((((((....((((.((((((....((.(((.......)))..)).(....).....))))))))))))))))))).((((....)))))))....... ( -38.70)
>DroVir_CAF1 143167 120 - 1
AAGAGGGCAUUGACAAAAUGGCUGAUGAGGAACUUAUUGAGGAUCAGCAAUUGACUCAAAACUUAGAGGAAACGACAACAUCUGAGGUGAUUGGCCAGGAGCGAAAGCUUGUCAAGAAGA
.........(((((....((((..((.(........(((((.............)))))..(((((((....)(....).)))))).).))..)))).((((....)))))))))..... ( -32.22)
>DroGri_CAF1 118127 120 - 1
AGGAGGGCAUUGACAAAGUGGCUGAUGAGGAACUGAUAGAGGACCAACAGCUGAUACAAAACUUACAAGAAACGACUACGUCGGAGGUGAUUGGUCAGGAGCGUAAGCUGGUAAAGAAGA
....((.((((.....)))).))........(((.......((((((((.((.........((....))...((((...)))).)).)).))))))...(((....))))))........ ( -23.60)
>DroWil_CAF1 161940 120 - 1
AGGAAGGUAUUGAUAAAAUGGCCGAUGAGGAGCUGAUUGAAGAUCAACAACUAAUACAAAAUCAACAAGAGACCACAACCUCUGAAGUGAUUGGCCAGGAACGCAAGUUGGUCAAGAAAA
.........(((((....(((((....((..(.(((((...))))).)..)).......(((((...((((........))))....))))))))))..(((....))).)))))..... ( -26.70)
>DroMoj_CAF1 122032 120 - 1
AAGAGGGCAUCGACAAAGUGGCCGAUGAGGAGCUGAUCGAGGAUCAGCAAUUGACUCAGAACUUAGAGGAAACAACUACGUCUGAGGUAAUUGGCCAGGAGCGCAAGCUAGUCAAAAAGA
...........(((....((((((((.....(((((((...)))))))......((((((...(((.(....)..)))..))))))...))))))))..(((....))).)))....... ( -42.60)
>DroAna_CAF1 124164 120 - 1
AGGAGGGUAUCGAUAAAGUUGCCGAUGAGGAGCUUAUCGAGGAUCAACAGCUGACCCAGAACCAGCAGGAAACGACAACCUCCGAGGUGGUAGGCCAGGAACGCAAACUGGUCAAAAAGA
.(((((...(((((((.(((.((.....))))))))))))...((....((((.........)))).(....)))...))))).........((((((.........))))))....... ( -37.00)
>consensus
AAGAGGGCAUUGACAAAGUGGCCGAUGAGGAGCUGAUAGAGGAUCAACAACUGACACAAAACCAACAGGAAACGACAACCUCUGAGGUGAUUGGCCAGGAGCGCAAGCUGGUCAAGAAGA
...........(((....(((((((((..((.((......)).))..)............(((....(((..........)))..))).))))))))..(((....))).)))....... (-15.68 = -15.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:34 2006