Locus 6878

Sequence ID 3L_DroMel_CAF1
Location 18,531,649 – 18,531,747
Length 98
Max. P 0.993521
window11153

overview

Window 3

Location 18,531,649 – 18,531,747
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.22
Mean single sequence MFE -13.18
Consensus MFE -11.24
Energy contribution -11.08
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -2.39
Structure conservation index 0.85
SVM decision value 2.40
SVM RNA-class probability 0.993521
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18531649 98 - 23771897
GAUAAAAAUAAAUAAAUAAAUCGUCCGAAAGAAAUCGGAGAAAAUGGGAAAAUCUGUUUUGAAAAGAAAAACAAAUCGAGCAAAUUGCAAAGGGGCAA
(((.................((.(((((......))))))).............((((((.......)))))).))).......((((......)))) ( -12.90)
>DroSec_CAF1 156505 97 - 1
GAUAAAAAUAAAUAAAUAAAUCGUCGGAAAGAAAUCGGAGAAAAUGGAGAAAUCUGUUUUGAAAAGGAAAACAAAUCGAGCAAAUUGCAAAGGGGCA-
......................(((.........((((..((((((((....)))))))).....(.....)...))))((.....)).....))).- ( -12.60)
>DroSim_CAF1 142812 98 - 1
GAUAAAAAUAAAUAAAUAAAUCGUCGGAAAGAAAUCGGAGAAAAUGGAGAAAUCUGUUUUGAAAAGGAAAACAAAUCGAGCAAAUUGCAAAGGGGCAA
......................(((.........((((..((((((((....)))))))).....(.....)...))))((.....)).....))).. ( -12.60)
>DroEre_CAF1 153463 98 - 1
GAUAAAAAUAAAUAAAUAAAUCGUCGGAAAGAAAUCGGGGAAAAUGGAGAAAUCUGUUUUGAAAAGCAAAACAAAUCGAGCAAAUUGCAAAGAGGCAA
......................(((.........((((.......(((....)))((((((.....))))))...))))((.....)).....))).. ( -14.50)
>DroYak_CAF1 158212 98 - 1
GAUAAAAAUAAAUAAAUAAAUGGUCGGAAAGAAAUCGGAGAAAAUGGAGAAAUCUGUUUUGAAAAGGAAAACAAAUCGAGCAAAUUGCAAAGAGGCAA
....................((.((((.............((((((((....)))))))).....(.....)...)))).))..((((......)))) ( -13.30)
>consensus
GAUAAAAAUAAAUAAAUAAAUCGUCGGAAAGAAAUCGGAGAAAAUGGAGAAAUCUGUUUUGAAAAGGAAAACAAAUCGAGCAAAUUGCAAAGGGGCAA
......................(((.........((((..((((((((....)))))))).....(.....)...))))((.....)).....))).. (-11.24 = -11.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:58 2006