Locus 6877

Sequence ID 3L_DroMel_CAF1
Location 18,528,226 – 18,528,335
Length 109
Max. P 0.659844
window11152

overview

Window 2

Location 18,528,226 – 18,528,335
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 91.01
Mean single sequence MFE -30.87
Consensus MFE -28.20
Energy contribution -28.04
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.22
Structure conservation index 0.91
SVM decision value 0.27
SVM RNA-class probability 0.659844
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18528226 109 - 23771897
GUCAGCAGCUGAGGAGGCGCCACAUCAGCAUCUCUGGCACUUGUUCCGCCAUUUGAAUCCGGUGCUCAUCCUCUC-CCAGUUGGCUGGUCCCUUCUCCUACUCUUUCCCC
.((((((((((.(((((((((.......((....((((.........))))..)).....))))).......)))-)))))).)))))...................... ( -28.01)
>DroSec_CAF1 152623 107 - 1
GUCAGCAGCUGAGGAGGCGCCACAUCAGCAUCUCUGGCACUUGUUCCGCCAUUUGAAUCCGGUGCUCAUCCUCUCCCCAGUUGGCUGGCCCCUUCUCUUACUCUUUC---
(((((((((((.(((((((((.......((....((((.........))))..)).....))))).......)))).))))).))))))..................--- ( -31.21)
>DroSim_CAF1 138123 107 - 1
GUCAGCAGCUGAGGAGGCGCCACAUCAGCAUCUCUGGCACUUGUUCCGCCAUUUGAAUCCGGUGCUCAUCCUCUCCCCAGUUGGCUGGCCCCUACUCUUACUCCUUC---
(((((((((((.(((((((((.......((....((((.........))))..)).....))))).......)))).))))).))))))..................--- ( -31.21)
>DroEre_CAF1 150073 100 - 1
GUCAGCAGCUGUGGAGGAGCCACAUCAGCAUCUCUGGCACUUGUUCCGCCAUUUGAAUCCGGUGCUCAUCCUCUC-CCAGUUGGCUGGCCCCCUC------CCUUGU---
(((((((((((.((((((((.......))......((((((.((((........))))..))))))..)))))).-.))))).))))))......------......--- ( -31.60)
>DroYak_CAF1 154586 106 - 1
GUCAGCAGCUGAGGAGGAGCCACAUCAGCAUCUCUGGCACUUGUUCCGCCAUUUGAAUCCGGUGCUCAUCCUCUC-CCAGUUGGCUGGCCCCUUCUCCGGUCCUUGC---
(((((((((((.((((((((.......))......((((((.((((........))))..))))))..)))))).-.))))).)))))).((......)).......--- ( -32.30)
>consensus
GUCAGCAGCUGAGGAGGCGCCACAUCAGCAUCUCUGGCACUUGUUCCGCCAUUUGAAUCCGGUGCUCAUCCUCUC_CCAGUUGGCUGGCCCCUUCUCCUACUCUUUC___
(((((((((((.(((((.((.......))......((((((.((((........))))..))))))...)))))...))))).))))))..................... (-28.20 = -28.04 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:57 2006