Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,516,646 – 18,516,739 |
Length | 93 |
Max. P | 0.901248 |
Location | 18,516,646 – 18,516,739 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -38.12 |
Consensus MFE | -24.81 |
Energy contribution | -24.87 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.15 |
Mean z-score | -2.87 |
Structure conservation index | 0.65 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18516646 93 + 23771897 -----------AGUCCUUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGC-UGCCUGCGGGAUAUGGAG -----------.(((((.(((.(((((.((....)).)))))...(((.----(((((..((((.(((.....)))..)).))..)))))-.)))))))))))...... ( -33.20) >DroPse_CAF1 145763 102 + 1 GAGGUGAGAGAAAUGCCUGCAUUUGUCAGUCUAGGCAGCCAAUAUGGCUGCCUGCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGCCAGCUUGCAGGC------- ..............(((((((.(((.......((((((((.....))))))))(((((..((((.(((.....)))..)).))..))))))))..)))))))------- ( -42.20) >DroEre_CAF1 138062 93 + 1 -----------AGUCCAUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGCGCGCACGGCGGAAGUGAUUUGAGC-UGCCUGCAGGACAUGGAG -----------.((((.((((.(((((.((....)).)))))...(((.----(((((..((((.(((.....)))..)).))..)))))-.)))))))))))...... ( -37.20) >DroYak_CAF1 142349 93 + 1 -----------AGUCCAUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGUGCGCACGGCGGAAGUGAUUUGAGC-UGCCUGCAGGACAUGGAG -----------.((((.((((.(((((.((....)).)))))...(((.----(((((..((((.(((.....)))..)).))..)))))-.)))))))))))...... ( -35.50) >DroAna_CAF1 135736 93 + 1 -----------GGUCCUUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGUGCGCAGAACGGAAGUGAUUUGAGC-UGCCUGCAGGACAAAAAG -----------.(((((.(((.(((((.((....)).)))))...(((.----(((((..(((((....))).((....))))..)))))-.)))))))))))...... ( -35.90) >DroPer_CAF1 143311 96 + 1 ------AGAGAAAUGCCUGCAUUUGUCAGUCUAGGCAGCCAAUAUGGCUGCCUGCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGGCAGCUUGCAGGC------- ------........(((((((.(((((....(((((((((.....))))))))).((((((((...((.....)))))))))).....)))))..)))))))------- ( -44.70) >consensus ___________AGUCCAUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU____GCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGC_UGCCUGCAGGACAUGGAG ...............((((((.(((((......))))).......(((.....(((((..((((.(((.....)))..)).))..)))))..)))))))))........ (-24.81 = -24.87 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:56 2006