Locus 6873

Sequence ID 3L_DroMel_CAF1
Location 18,506,556 – 18,506,667
Length 111
Max. P 0.508941
window11146

overview

Window 6

Location 18,506,556 – 18,506,667
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.96
Mean single sequence MFE -28.75
Consensus MFE -17.58
Energy contribution -18.12
Covariance contribution 0.53
Combinations/Pair 1.20
Mean z-score -2.06
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.508941
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18506556 111 - 23771897
GUAGUGUCGGAAACAGGCCGCAAGCAUUUUCAUUUGCAUUCGGAAUGGAUUGCCGGACAUGGAAUAAAACCGUUUCCAAAAAA---------AAAAGUGAAUGCAAGUGGUCCAGAAACA
...((.(((....).((((((..((((..(((((((((.((......)).))).(((.((((.......)))).)))......---------..))))))))))..))))))..)).)). ( -31.90)
>DroSec_CAF1 131131 113 - 1
GUAGUGUCGGAAACAGGCCGCAAGCAUUUUCAUUUGCAUUCGGAAUGGAUUGCCGGACAUGGAAUAAAACCGUUUCCAAAAAA-------AAGAAAGUGAACGCAAGUGGUCCAGAAACA
...((.(((....).((((((..((...((((((((((.((......)).))).(((.((((.......)))).)))......-------....))))))).))..))))))..)).)). ( -30.00)
>DroSim_CAF1 116301 114 - 1
GUAGUGUCGGAAACAGGCCGCAAGCAUUUUCAUUUGCAUUCGGAAUGGAUUGCCGGACAUGGAAUAAAACCGUUUCCAAAAAA-----A-AAAAAAGUGAAUGCAAGUGGUCCAGAAACA
...((.(((....).((((((..((((..(((((((((.((......)).))).(((.((((.......)))).)))......-----.-....))))))))))..))))))..)).)). ( -31.90)
>DroEre_CAF1 128229 109 - 1
GUAGUGUCGGAAACAGGCCGCAAGCAUUUUCAUUUGCAUUCGAAAUGGAUUGCCGGACAUGGAAUGAAACCGUUUCCAAAACG-------AA-AAAA---AUGCAAGUGGUCCAAAAACA
........(....).((((((..(((((((.....(((.((......)).))).(((.((((.......)))).)))......-------..-.)))---))))..))))))........ ( -28.30)
>DroYak_CAF1 132194 112 - 1
GUAGUGUCGGAAACAGGCCGCAAGCAUUUUCAUUUGCAUUCGAAAUGGUUUGCCGGACAUGGAAUGAAACCGUAUCCAAAAAG-------AA-AAAAUGCAUGCAAGUGGUCCAAAAACA
........(....).((((((..((((...(((((...(((.....((....))(((.((((.......)))).))).....)-------))-.))))).))))..))))))........ ( -27.40)
>DroPer_CAF1 133814 118 - 1
AAAGUGUCGUGAA-AAGCCGCAAGCAUUUUCAUUUGCAUGCAAAAUGUAGCGAUGGACAUGGGAUGAAAACGUUUCGGGGAAUUGGUAUCAA-AAAACGAAUUUAAAAACAACAACAGCA
...((((((((((-((..(....)..)))))))((((.(((.....)))))))..)))))(..(((....)))..)...(((((.((.....-...)).)))))................ ( -23.00)
>consensus
GUAGUGUCGGAAACAGGCCGCAAGCAUUUUCAUUUGCAUUCGAAAUGGAUUGCCGGACAUGGAAUAAAACCGUUUCCAAAAAA_______AA_AAAAUGAAUGCAAGUGGUCCAAAAACA
........(((.....(.(....))....((((((((((.(.....((....))(((.((((.......)))).))).....................).)))))))))))))....... (-17.58 = -18.12 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:51 2006