| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,491,981 – 18,492,097 |
| Length | 116 |
| Max. P | 0.729878 |
| Location | 18,491,981 – 18,492,097 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -17.50 |
| Energy contribution | -20.00 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18491981 116 - 23771897 GAAUCGCUCUUUAGUGGAAGAGCUAAUAUCGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUAAACGGUGUGAUACACACUGUGAUAAACAGUGGAAUUCCGAGUACCAAA ...(((((((((....)))))))...........((((.((....(((((((((((.(((...))))))))))))))..)).((((((.....))))))...))))))........ ( -31.60) >DroSec_CAF1 125651 116 - 1 GAAUCGCUCUUUAGUGGAAGAGCUAAUAUUGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUGAACGGUGUGAUACACACUGUGAUAUACAGUGGAAUUCCGGGUACCAAA ((((((((((((....)))))))...(((((((((............((((((((.....)))))))).((((((((...))))))))..)))))))))).))))........... ( -31.10) >DroSim_CAF1 110747 116 - 1 GAAUCGCUCUUUAGUGGAAGAGCUAAUAUUGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUGAACGGUGUGAUACACACUGUGAUAUACAGUGGAAUUCCGGGUACCAAA ((((((((((((....)))))))...(((((((((............((((((((.....)))))))).((((((((...))))))))..)))))))))).))))........... ( -31.10) >DroYak_CAF1 126892 95 - 1 GAAUCUUUCAUUAGCGGAAUAGAUAAUAUAACGCGGAGUGUUUAACUUUUUGUUUAAUUGAAG---------UUGGGAUACACACUGUGAUAUUCAGUUUAAU------------A ((((...((((..(((..(((.....)))..)))((.((((((((((((..........))))---------))))...)))).)))))).))))........------------. ( -17.00) >consensus GAAUCGCUCUUUAGUGGAAGAGCUAAUAUUGUGUGGAAAGUUUAGCAUAUUGUUUAAUUGGAACAAUGAACGGUGUGAUACACACUGUGAUAUACAGUGGAAUUCCGGGUACCAAA .....(((((((....)))))))...........((((.((....(((((((((((..........)))))))))))..)).((((((.....))))))...)))).......... (-17.50 = -20.00 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:50 2006