Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,460,706 – 18,460,802 |
Length | 96 |
Max. P | 0.587164 |
Location | 18,460,706 – 18,460,802 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.08 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -17.49 |
Energy contribution | -17.36 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.44 |
Mean z-score | -1.41 |
Structure conservation index | 0.65 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587164 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18460706 96 - 23771897 AAAGGCCGAUGAUGAGGUUG-AGAU--------AUU-GGUGGGGGAAGAAAAUUCGUAUAGACUGAACGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU ....((((((((..((((((-....--------.(.-.((..(.(((.....))).)....))..).((....)).....))))))..))).......)))))... ( -23.81) >DroSec_CAF1 101275 95 - 1 AAAGGCCGAUGAUGAGGUUG-AGAU--------AUUUGUUGGGGGAAGAAAAUUCUUAUAGACUG--CGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU ....(((((((..(((..((-.(((--------(...((((.(((((((....))))........--((....)).))).))))..)))).))))))))))))... ( -25.70) >DroSim_CAF1 92135 95 - 1 AAAGGCCGAUGAUGAGGUUG-AGAU--------AUUUGUUGGGGGAAGAAAAUUCUUAUAGACUG--CGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU ....(((((((..(((..((-.(((--------(...((((.(((((((....))))........--((....)).))).))))..)))).))))))))))))... ( -25.70) >DroEre_CAF1 99272 93 - 1 AAAGGCCGAUGAUGAGGUUGCAGAU--------AAUGGUUGGG---GGAAAAUUCUUAGAGGCUG--CGUGAACGACUCGCAACUUUGUCACAUUCCAUCGGCAUU ....((((((((..(((((((....--------.........(---(((....)))).(((....--((....)).))))))))))..))).......)))))... ( -29.11) >DroYak_CAF1 102705 96 - 1 AAAGGCCGAUGAUGAGGUUGGGUGU--------AAUGGUUGAGGGGAGAAAAUUCUUAUAGACUG--CGUGAACGACUCGCAACUUUGUCACAUUCCAUUGGCAUU ....((((((((..((((((.(.((--------...((((...(((((....)))))...)))).--((....)))).).))))))..))).......)))))... ( -26.71) >DroAna_CAF1 97316 99 - 1 GAAGACCGAUGAUAGGGACGAAAAUGAGAGGAUGUU-GCCGAGGCUA----UGUGGGCGUGGUUG--UGUGAACAACUUGCAACUUUGUCAAAUUCCAUCGGCAUU ...(.((((((..(..((((((..((..((..((((-..((..((((----((....))))))..--))..)))).))..))..))))))...)..)))))))... ( -29.60) >consensus AAAGGCCGAUGAUGAGGUUG_AGAU________AUU_GUUGGGGGAAGAAAAUUCUUAUAGACUG__CGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU ....((((((((((((((((.................(((.....((((....))))...)))....((....)).....))))))))))).......)))))... (-17.49 = -17.36 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:46 2006