| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,449,656 – 18,449,747 |
| Length | 91 |
| Max. P | 0.973184 |
| Location | 18,449,656 – 18,449,747 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -17.33 |
| Energy contribution | -17.57 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.973184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18449656 91 + 23771897 GACGUGAAAAACGAUUGGAAAACUAUCUUUCUCUGGCACUGGGGAAAAUAUGGAGGUGUGAGUAUAUUGCAUUAUUAAGUUUCCCAUUACG ..(((.....)))..(((.(((((...(((((((......)))))))...(((..(((..(.....)..)))..)))))))).)))..... ( -18.20) >DroSec_CAF1 90714 83 + 1 GACGUGAAAAACGAUUGGAAAACUAUCUAUC--------UGGGGAAAAUAUGGAGGUGUGAGUAUUUUGCACUUUUAAAUUUCCCAUUACG ..(((((....((..((((......))))..--------))((((((...((((((((..((...))..))))))))..)))))).))))) ( -22.40) >DroSim_CAF1 81225 83 + 1 GACGUGAAAAACGAUUGGAAAACUAUCUAUC--------UGGGGAAAAUAUGGAGGUGUGAGUAUAUUGCACUUUUAAAUUUCCCAUUACG ..(((((....((..((((......))))..--------))((((((...((((((((..(.....)..))))))))..)))))).))))) ( -23.50) >DroYak_CAF1 91219 83 + 1 GACGUGAAAAACGAUUGGAAAACUAUCUAUC--------UAAGGAAAGUUAGAAGGUGCCACUAUAAUGCAUUUUUAAAUUUUCCAUCACA ...((((.....(((.(((......))))))--------...((((((((.((((((((.........)))))))).)))))))).)))). ( -21.50) >consensus GACGUGAAAAACGAUUGGAAAACUAUCUAUC________UGGGGAAAAUAUGGAGGUGUGAGUAUAUUGCACUUUUAAAUUUCCCAUUACG ...((((.....(((.(.....).)))..............((((((...(((((((((((.....)))))))))))..)))))).)))). (-17.33 = -17.57 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:41 2006