Locus 6863

Sequence ID 3L_DroMel_CAF1
Location 18,438,097 – 18,438,204
Length 107
Max. P 0.941452
window11131

overview

Window 1

Location 18,438,097 – 18,438,204
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 88.79
Mean single sequence MFE -22.90
Consensus MFE -20.13
Energy contribution -20.80
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -2.60
Structure conservation index 0.88
SVM decision value 1.32
SVM RNA-class probability 0.941452
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18438097 107 + 23771897
CAGUAAAUAAAUAGUUAUUUUAGCUUUGCAUCGAUUACAUUACAUUACAAAUGGGAUUUGCAAAGUUAGUUUAGCUAAUAACUAAUUUAACUAAGAUCCCAUUUACC
..((((((...((((((..(((((((((((..(((..((((........))))..))))))))))))))..)))))).......((((.....))))...)))))). ( -23.90)
>DroSec_CAF1 79443 107 + 1
CAGUAAGUAAACUGGCAUUUUAGCUUGGCAUCGAUUUUCUUACAUUACAAAUGCGAUUUGCAAAGUUAGUUUGGUUAAUAAUUCAUUUAACUAAGAUCCAAUUUACA
......(((((.(((....(((((((.((((((((((...........)))).)))..))).)))))))(((((((((........)))))))))..))).))))). ( -21.40)
>DroSim_CAF1 72234 107 + 1
CAGUAAAUAAACAGGUAUAUUAGCUUUGCAUCGAUUUUAUUACAUUACAAAUGGGAUUUGCAAAGUAAGUUUGGUUAAUAACUCAUUUAACUAAGAUCCAAUUUACA
..((((((..............((((((((..(((((((((........)))))))))))))))))...(((((((((........))))))))).....)))))). ( -23.40)
>consensus
CAGUAAAUAAACAGGUAUUUUAGCUUUGCAUCGAUUUUAUUACAUUACAAAUGGGAUUUGCAAAGUUAGUUUGGUUAAUAACUCAUUUAACUAAGAUCCAAUUUACA
..((((((...........(((((((((((..(((..((((........))))..))))))))))))))(((((((((........))))))))).....)))))). (-20.13 = -20.80 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:37 2006