| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,430,285 – 18,430,393 |
| Length | 108 |
| Max. P | 0.835512 |
| Location | 18,430,285 – 18,430,393 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.14 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -22.11 |
| Energy contribution | -22.72 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18430285 108 - 23771897 AUCAGGUCUGAGAAAAGGCAGCCAAUUGAAUGAUUUGCGGUAAGUUGGCCCAUAAAUUAACCAAGUUAAGUGACCUUCUCAAGUGGCUGUAACGGUUUAAUCUGAAGU .((((((.((((.....(((((((.((((.....(..(..(((.((((............)))).))).)..).....)))).))))))).....))))))))))... ( -29.70) >DroSec_CAF1 72643 108 - 1 AUCAGGUCUAAGACGAGGCAGCCAAUUGAAUGAUUUGCGGCAAGUUGGCCCAUAAAUUAACCAAGUUAAGUGACCUUCUCAAGUGGCUGUAGCGGUUUUAUCUGAAGA .((((((..((..((..(((((((.((((.(((((((.(((......)))..))))))).....(((....)))....)))).)))))))..)).))..))))))... ( -31.40) >DroSim_CAF1 66911 108 - 1 AUCAGGUCUGAGAUGAGGCAGCCAAUUGAAUGAUUUGCGGCAAGCUGGCCCAUAAAUUAACCAAGUUAAGUGACCUUCUCAAGUGGCUGUAGCGGUUUUAUCGGAAGA ......(((((..((..(((((((.((((.(((((((.(((......)))..))))))).....(((....)))....)))).)))))))..))......)))))... ( -27.90) >DroEre_CAF1 72504 107 - 1 AUCAGGUCUGAGACGAGGCAGCCAAUUGAAUGAUUUACGGCCAGUCGGCCCAUAAAUUAACCACGUUAAGUGACAUUCUCAAGUGGCUGCAGUGG-UUUAUCUGAAGU .((((((...((((.(.(((((((.((((.(((((((.((((....))))..)))))))..(((.....)))......)))).)))))))..).)-)))))))))... ( -37.60) >DroYak_CAF1 74112 105 - 1 AUAAGGUCUGAGACGAGGCAGCCAAUUGAAUGAUUUACGGCAAGGCGGCCCAUAAAUUCACCAAGUUAAGUGACGUUCUCAAGUGGCUGCAGUGGAUUUAUCUUA--- .((((((..((..((..(((((((...((((((((((.(((......)))..)))))((((........))))))))).....)))))))..))..)).))))))--- ( -31.70) >DroPer_CAF1 67925 88 - 1 --CAGGGC-----GCAGGCCCUCAAUCGAAUGAUUUGCGGCAAGUUGGGCCAUAAGUUAACAAACUUAAGUGAAAAACUCGAGUGGAUGUUGGGA------------- --.(((((-----....)))))((.((((.(..((..((((.......))).((((((....)))))).)..))..).)))).))..........------------- ( -22.80) >consensus AUCAGGUCUGAGACGAGGCAGCCAAUUGAAUGAUUUGCGGCAAGUUGGCCCAUAAAUUAACCAAGUUAAGUGACCUUCUCAAGUGGCUGUAGCGGUUUUAUCUGAAG_ .((((((......((..(((((((.((((.(((((((.(((......)))..))))))).....(((....)))....)))).)))))))..)).....))))))... (-22.11 = -22.72 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:34 2006