| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,429,800 – 18,429,893 |
| Length | 93 |
| Max. P | 0.641743 |
| Location | 18,429,800 – 18,429,893 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -20.39 |
| Consensus MFE | -11.41 |
| Energy contribution | -10.97 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18429800 93 - 23771897 U---------CAGUUUUGGCCAGAAACCAUGUCAAACUGGCCAGAGU---UCCGCCGCAAGCCCCACCAACAUCCAUAGAAAACGUGCAACGAAUUCCGCAAUAA .---------...((((((((((.............)))))))))).---...(((....).................(((..((.....))..))).))..... ( -16.52) >DroSec_CAF1 72170 93 - 1 U---------CGCUUUUGGCCAAAAACCAUGUCAAACUGGCCAGAGU---UCCGCCGCAAGCCACACCAACAUCCAUCGAAAACGUGCAACAAAUUCCGCAAUAA .---------.((.((((((((...............))))))))((---(.((((....)...........((....))....))).))).......))..... ( -15.36) >DroEre_CAF1 72051 93 - 1 U---------CGGCUUUGGCCAGAAACCAUGUCAUACUGGCCAGAUU---UCCGCCGCAAGCCACACCAACAUCCAUAGAAAACGUGCAACAAAUUCCACAAUGA .---------(((((((((((((.............)))))))))..---...))))...........................(((.((....)).)))..... ( -18.22) >DroYak_CAF1 73717 92 - 1 U---------CGGAUUUGGCCAGAAACCAUGUUAAACUGGCCAGAGU---UCCGCCGCAAGCCACACCAACAUCCAUAGAAAACGUGCAACAAAU-CCGCAAUAA .---------(((((((((((((.............))))))...((---(.((((....)...........((....))....))).)))))))-)))...... ( -20.62) >DroAna_CAF1 59657 102 - 1 UGGUUUGCUGCUGGUUUGGCCAGAAACCAUGUCAAACUGGCCAAAGU---CCGGCCGCAAGCCACACAAAGAUCCAUCGAGAACAUGCAACAAAUUCCACAAUAA ((((((((.((((((((((((((.............)))))))))..---))))).))))))))......................................... ( -33.82) >DroPer_CAF1 67531 81 - 1 C---------UGGUUAUGGCU---------------CUGGUUAUGGCUCUGCCGCCACAAGCCACACAAACAUCCAUCGGAAACAUGCAACAAAUUGCACAAUAA .---------......(((((---------------.((((...(((...)))))))..)))))..............(....).(((((....)))))...... ( -17.80) >consensus U_________CGGUUUUGGCCAGAAACCAUGUCAAACUGGCCAGAGU___UCCGCCGCAAGCCACACCAACAUCCAUAGAAAACGUGCAACAAAUUCCACAAUAA ..............(((((((((.............)))))))))........(.(....).).......................................... (-11.41 = -10.97 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:33 2006