| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,032,655 – 2,032,766 |
| Length | 111 |
| Max. P | 0.570848 |
| Location | 2,032,655 – 2,032,766 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.05 |
| Mean single sequence MFE | -18.07 |
| Consensus MFE | -6.22 |
| Energy contribution | -6.08 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2032655 111 + 23771897 UUCAGUGAUCACCUCUUCCUCCGAGACCUCCUCCAAUAUGGGAAUUUCCUGUGGAACUUCCUCAGUGAUCUUAAUCUUUAGCUCCUCAGCUUCCACAUCCGUUACCUUCUU ......((((((..........(((.....))).....((((((.((((...)))).)))).)))))))).........((((....)))).................... ( -19.20) >DroGri_CAF1 79820 105 + 1 UUCUGUCACAACCUCUUC------UAUUUCCUCAACCACUGGAACUUCGUGUGGAAUUUCUUCGGUGAUCUGAAUCUUUAAUUCAUCCGCCUCAACUUCCUUCACUUUCUU ..................------...((((.........))))....(((.((((.......((((...(((((.....)))))..)))).....))))..)))...... ( -14.50) >DroEre_CAF1 91482 111 + 1 UUCAGUGAUCACCUCUUCUUCCGAGACCUCCUCCACUAUGGGAAUUUCCUGCGGAAGUUCCUCAGUGAUCUGAAUCUUUAGCUCCUCAGCUUCUACAUCCUUUACCUUCUU ((((..((((((..........(((.....))).....(((((((((((...))))))))).)))))))))))).....((((....)))).................... ( -23.90) >DroWil_CAF1 120863 105 + 1 UACAGUCUCAACCUCUUC------AACCUCUUCAAUAAGUGGAAUUUCUUCUGGAGUUUCUUCAGUUAUCUUGAUCUUGAGUUCAUCCGCAGCAACUUCCUUUACCUUCUU ..................------..............(((((.......((((((...))))))......(((........))))))))..................... ( -11.90) >DroYak_CAF1 86162 111 + 1 UUCAGUAAUCACCUCUUCAUCCGAGACCUCUUCCACUAUGGGAAUUUCCUGUGGAAGUUCCUCAGUGAUUUGAAUCUUAAGCUCCUCAGCUUCCACAUCCUUUACCUUCUU ((((..(((((((((.......)))....(((((((...(((.....)))))))))).......))))))))))....(((((....)))))................... ( -22.90) >DroMoj_CAF1 93586 105 + 1 UUCUUCCACAACUUCCUC------AAUUUCUUCCACUACAGGAACUUCUUGUGGUGUUUCUUCCGUGAUUUGGAUCUUUAAUUCCUCUGCUGCAACCUCCUUGACCUUCUU ................((------((.......(((((((((.....)))))))))........((..(..(((........)))...)..)).......))))....... ( -16.00) >consensus UUCAGUCACAACCUCUUC______GACCUCCUCCACUAUGGGAAUUUCCUGUGGAAUUUCCUCAGUGAUCUGAAUCUUUAGCUCCUCAGCUUCAACAUCCUUUACCUUCUU .................................((((...((((.(((.....))).))))..))))............................................ ( -6.22 = -6.08 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:31 2006