| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,428,280 – 18,428,379 |
| Length | 99 |
| Max. P | 0.757559 |
| Location | 18,428,280 – 18,428,379 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 58.33 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -8.86 |
| Energy contribution | -8.53 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18428280 99 - 23771897 -----AGCUGUCAAGUCUAAAUAAAUAUAUUCAUAUAUACGGGUAUACAUUUAUAGAAUGAACUACGAGUGUCUUAUCGGUGUUCUAAGCUGCCUAUUGGUAGC -----.(((....)))....................((((.((((.(((((..(((......)))..)))))..)))).)))).....((((((....)))))) ( -22.10) >DroSec_CAF1 66134 88 - 1 -UGACAGCUC-CCAGUCUAAAUAAAUCUAUGCAUAUAUACGAGUA--------UAGAAUGAAU------UGUCUUAUCGUUGUUUUAAGCUGCCUAUUGGUAGC -.((((((..-..((.(........(((((((..........)))--------))))......------.).))....))))))....((((((....)))))) ( -19.16) >DroSim_CAF1 63545 94 - 1 -UGACAGCUC--CAGUCUA-AUAUAUCUAUGCAUAUAUACGAGUAUACAUACAUAGAAUGAAU------UGUCUUAUCGUUGUUUUAAGCUGCCUAUUGGUAGC -.((((((..--.((.(..-.....((((((.((.((((....)))).)).))))))......------.).))....))))))....((((((....)))))) ( -20.84) >DroEre_CAF1 71058 94 - 1 UUGA--AAUCUAGACCCUAAAUAAAUCUAUACAU--AUACGAGUAU------ACAGAAUGAAUCGAGAGUGCUUAAUCAGGGUUAUUAGCUGCCUUUUGGCAGC ....--......((((((.........(((((..--......))))------)..((.(((..(....)...))).))))))))....((((((....)))))) ( -22.60) >DroYak_CAF1 72651 86 - 1 ------GGUGUCAAGUCUAUUUAAUUUUUU------AUACAUCUUU------AUAGAAUGAAUCGUAGGUGCUUUAUCGGGGUUAUUAGCUGCCUAAUGGUAGC ------((((..((((((((......((((------(((......)------))))))......))))..))))))))..........((((((....)))))) ( -15.60) >DroPer_CAF1 66567 85 - 1 -------------CGUCGAAA-AAACGUACACA--ACACUGAAAACAAAUU---UCAAUGAACAUCGAACGACACAUUAAUUUAGUGCUCUGUCUGCUGACAGC -------------.((((...-....(....).--.((.(((((.....))---))).)).........)))).(((((...)))))..(((((....))))). ( -13.10) >consensus ______GCUC_CAAGUCUAAAUAAAUCUAUACAU_UAUACGAGUAU______AUAGAAUGAAU___GAGUGUCUUAUCGGUGUUAUAAGCUGCCUAUUGGUAGC ........................................................................................((((((....)))))) ( -8.86 = -8.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:32 2006