Locus 6857

Sequence ID 3L_DroMel_CAF1
Location 18,418,734 – 18,418,825
Length 91
Max. P 0.745012
window11122

overview

Window 2

Location 18,418,734 – 18,418,825
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -22.72
Consensus MFE -15.87
Energy contribution -16.03
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.70
SVM decision value 0.46
SVM RNA-class probability 0.745012
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18418734 91 - 23771897
CCACUCAGCUCAGCUCAACUCAACGGAACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAGACCC--GACUGGAUUGGAUUGA
.........((((..(((..((.(((...(((((((((((...(((.....))).)))))))..)))).....))--)..))..)))..)))) ( -24.50)
>DroSec_CAF1 54805 82 - 1
---------UCAGCUCAACUCAACGGAACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAGACCC--GGCUGGAUUGGAUUGA
---------((((..(((..((.(((...(((((((((((...(((.....))).)))))))..)))).....))--)..))..)))..)))) ( -26.00)
>DroSim_CAF1 54120 82 - 1
---------UCAGCUCAACUCAACGGAACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAGACCC--GGCUGGAUUGGAUUGA
---------((((..(((..((.(((...(((((((((((...(((.....))).)))))))..)))).....))--)..))..)))..)))) ( -26.00)
>DroYak_CAF1 63049 91 - 1
CUACUCCACUCAGCUCAGCUCAACGGAACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAGACCC--GACUGGAUUGGAUUGA
.........((((..(((..((.(((...(((((((((((...(((.....))).)))))))..)))).....))--)..))..)))..)))) ( -24.20)
>DroAna_CAF1 50825 71 - 1
--------------------CGACGCUACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAGACCA--GCCUGGAUUGAAUUGA
--------------------.........(((((((((((...(((.....))).)))))))..))))(((.((.--....)).)))...... ( -17.00)
>DroPer_CAF1 58127 72 - 1
--------------------CCACUCUACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAUGCCAUAGACGGGUCUGGUCUG-
--------------------..(((..((.((((((((((...(((.....))).))))))))((((.....))))....))))..)))...- ( -18.60)
>consensus
_________UCAGCUCAACUCAACGGAACUCCAAAGUGCAAUGCAGCGCAACUGAUGCACUUUAUGGACAGACCC__GACUGGAUUGGAUUGA
.............................(((((((((((...(((.....))).)))))))..))))(((.((.......)).)))...... (-15.87 = -16.03 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:28 2006