| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,398,405 – 18,398,511 |
| Length | 106 |
| Max. P | 0.694273 |
| Location | 18,398,405 – 18,398,511 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.58 |
| Mean single sequence MFE | -31.45 |
| Consensus MFE | -21.17 |
| Energy contribution | -21.28 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18398405 106 + 23771897 UGGCGAUGUUGUUGG-----UGUCCUCGCUGGUUAUUGCAGCGGAAGCGAUGUCCGUUGAUUGAUAUCGCAUUCAGGCGUGUUGAAAAUUAUUUGCAUUGAUAAUUCGCUG .(((((.(((((..(-----(((...(((((.......)))))(((((((((((........)))))))).)))....................))))..)))))))))). ( -35.80) >DroVir_CAF1 114995 90 + 1 ------UCUAGUCGA-----U----------GUCAGUGCAGCGGAAGCGAUGCGCGUUGAUUGAUAUCGCAUUCAGGCGUGCUGAAAAUUAUUUGCAUUGAUAAUUCGCUG ------..(((.(((-----(----------(((((((((((....))...(((((((((.((......)).))).))))))...........))))))))))..)))))) ( -32.10) >DroGri_CAF1 178772 90 + 1 ------CAGAGUAGA-----U----------GUCAGUGCGGCGGAAGCGAUGCCCGUUGAUUGAUAUCGCAUUCAGGCGUGCUGAAAAUUAUUUGCAUUGAUAAUUCGCUG ------(((.(((((-----(----------(((((..((.(.(((((((((..((.....)).)))))).))).).))..))))....))))))).)))........... ( -27.50) >DroEre_CAF1 42232 106 + 1 CGGCGGUGUUGUUGG-----UGUCCUCGCUGGUUAUUGCAGCGGAAGCGAUGUCCGUUGAUUGAUAUCGCAUUCAGGCGUGUUGAAAAUUAUUUGCAUUGAUAAUUCGCUG ((((((.(((((..(-----(((...(((((.......)))))(((((((((((........)))))))).)))....................))))..))))))))))) ( -35.80) >DroYak_CAF1 43096 111 + 1 UGGCUAUGUUGUUGGUUGGUUGUCCUCGCUGGUUAUUGCAGCGGAAGCGAUGUCCGUUGAUUGAUAUCGCAUUCAGGCGUGUUGAAAAUUAUUUGCAUUGAUAAUUCGCUG .(((...(((((..((.((....)).(((((.......)))))(((((((((((........)))))))).)))..(((.((........)).)))))..)))))..))). ( -28.40) >DroMoj_CAF1 156288 90 + 1 ------UCUAGUUGA-----U----------GUCGGUGCAGCGGAAGCGAUGUCCGUUGAUUGAUAUCGCAUUCAGGCGUGCUGAAAAUUAUUUGCAUUGAUAAUUCGCUG ------..((((.((-----(----------((((((((((.....((((((((........)))))))).(((((.....)))))......)))))))))).))).)))) ( -29.10) >consensus ______UGUAGUUGA_____U__________GUCAGUGCAGCGGAAGCGAUGUCCGUUGAUUGAUAUCGCAUUCAGGCGUGCUGAAAAUUAUUUGCAUUGAUAAUUCGCUG ......................................(((((((.((((((((........)))))))).(((((.....)))))..................))))))) (-21.17 = -21.28 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:21 2006