| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,385,912 – 18,386,014 |
| Length | 102 |
| Max. P | 0.977997 |
| Location | 18,385,912 – 18,386,014 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.77 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -14.81 |
| Energy contribution | -15.56 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.977997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18385912 102 + 23771897 -----GCAAAUAAGCCGCAAA-ACCAAAAAUUGGCUGCCAAAAUCUGGCACACA----------GUGUCCUAAUUGAUUUAUGAGGGUUUCCCU-CAUAAGCCCUCCAAAAG-CCUCAAC -----((......))......-..........((((((((.....))))...((----------((......)))).((((((((((...))))-)))))).........))-))..... ( -24.60) >DroPse_CAF1 22805 100 + 1 -----GCAAAUAAGCCGCAAA-ACCAAAAAUUGGCUGCCAAAAUCUGGCA--CG----------GCGUCCUAAUUGAUUUAUGAGGGUUUUCCA-CGUAAACCCUCUAAAAG-ACCUAAC -----........((((....-.(((.....))).(((((.....)))))--))----------))...........((((.((((((((....-...))))))))))))..-....... ( -26.20) >DroWil_CAF1 424971 91 + 1 GGCGGUGAAAUAAGCCGCAAA-ACCAAAAAUUGGCUGCCAAAAUCUGGCACAUA------------GUCCUAAUUGAUUUAUGAGGGUUUCCC--CAUAAGC-------------UCAA- .(((((.......)))))...-.(((.....))).(((((.....)))))....------------.......((((((((((.(((...)))--)))))).-------------))))- ( -24.30) >DroMoj_CAF1 143127 110 + 1 -----GCGUAAAAGCCGCAAAAACCAAAAAUUGGCUACCGAAAUCUGGCACAGAACCUGGUUCAUGGACCUAAUUGAUUUAUGAGGGUUUUCC---AGAACCCCUUU--CUGUCCAUACC -----..(((..(((((..............))))).........(((.((((((...(((((.(((((((.((......)).)))....)))---))))))...))--)))))))))). ( -26.84) >DroAna_CAF1 20675 102 + 1 -----GCAAAUAAGCCGCAAA-ACCAAAAAUUGGCUGCCAAAAUCUGGCAAAGA----------GUGUCCUAAUUGAUUUAUGAGGGUUUCCCCGGGUAAACCCGCUAAAAA-ACUCAA- -----.(((.((.(.(((...-.(((.....))).(((((.....)))))....----------))).).)).))).....((((..(((...((((....))))...))).-.)))).- ( -23.50) >DroPer_CAF1 22697 100 + 1 -----GCAAAUAAGCCGCAAA-ACCAAAAAUUGGCUGCCAAAAUCUGGCA--CG----------GCGUCCUAAUUGAUUUAUGAGGGUUUUCCA-CGUAAACCCUCUAAAAG-ACCUAAC -----........((((....-.(((.....))).(((((.....)))))--))----------))...........((((.((((((((....-...))))))))))))..-....... ( -26.20) >consensus _____GCAAAUAAGCCGCAAA_ACCAAAAAUUGGCUGCCAAAAUCUGGCACACA__________GCGUCCUAAUUGAUUUAUGAGGGUUUCCC__CAUAAACCCUCUAAAAG_ACUCAAC ............(((((..............)))))((((.....)))).................................((((((((........)))))))).............. (-14.81 = -15.56 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:18 2006