Locus 6851

Sequence ID 3L_DroMel_CAF1
Location 18,378,210 – 18,378,302
Length 92
Max. P 0.971851
window11110

overview

Window 0

Location 18,378,210 – 18,378,302
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.98
Mean single sequence MFE -23.43
Consensus MFE -20.16
Energy contribution -20.38
Covariance contribution 0.23
Combinations/Pair 1.25
Mean z-score -3.16
Structure conservation index 0.86
SVM decision value 1.68
SVM RNA-class probability 0.971851
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18378210 92 - 23771897
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUCGCACACUGAGAAGAAAAUAUAGUAA-CUAAGUUUGAUA-----
......(((((((....)))))))((((.(.((((.((((((.((..........))))))))....)))).).))))..-............----- ( -19.50)
>DroSec_CAF1 14954 97 - 1
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUCGCACACUGCAAAGAAAAUGUAGUAU-CUAAGUUAGAAAAUGCU
......(((((((....))))))).......(((((((((((.((..........))))))))))))).....(((...(-(((...))))...))). ( -26.20)
>DroSim_CAF1 14220 97 - 1
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUCGCACACUGCAAAAAAAAAGUAGUAA-CUAAGUUAGAAAAGGCU
......(((((((....)))))))(((....(((((((((((.((..........)))))))))))))....))).....-................. ( -26.20)
>DroEre_CAF1 22349 97 - 1
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUCGCACACUGCAAAGAAAGUGUGGUAC-CAAAGUGGGCAAGGGUC
......(((((((....)))))))(((....(((((((((((.((..........)))))))))))))..)))...((.(-(.....))))....... ( -26.60)
>DroYak_CAF1 21998 97 - 1
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUCGCACACUGUCAGGAAAAUUUACUGUUUAAAGUAG-AAAAGUUG
......(((((((....)))))))(((....(((((((((((.((..........)))))))).)))))...((((((......)))))-)..))).. ( -24.70)
>DroAna_CAF1 13686 86 - 1
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUUCAGCACUUGAAGAAAAGAUUAGAG--UUAAGAU----------
......(((((((....))))))).(((((((..((.((.....)).))..)))))))..(((......))).......--.......---------- ( -17.40)
>consensus
AAAAAACAAUUUCGAAGGAAAUUGACUGAAAUUUUGCAGUGUUGCUUCAUCAUUCGCACACUGCAAAGAAAAUGUAGUAA_CUAAGUUAGAAAAGG__
......(((((((....))))))).......(((((((((((.((..........))))))))))))).............................. (-20.16 = -20.38 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:17 2006