Locus 6850

Sequence ID 3L_DroMel_CAF1
Location 18,376,337 – 18,376,433
Length 96
Max. P 0.595163
window11109

overview

Window 9

Location 18,376,337 – 18,376,433
Length 96
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 71.53
Mean single sequence MFE -30.93
Consensus MFE -11.24
Energy contribution -12.53
Covariance contribution 1.29
Combinations/Pair 1.21
Mean z-score -1.90
Structure conservation index 0.36
SVM decision value 0.12
SVM RNA-class probability 0.595163
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18376337 96 - 23771897
GUUGUGAGGUGAGUUGAAGUGUUUGAUUGCCAAGUGCUUUGAGUACAGCUGUGCUGGGCCAACAAAGUUUCAGU--------------UGAUAGAGA--GAAAUUACAUAAU
((((((.(((.(.(..(((..((((.....))))..)))..).).((((...)))).))).....((((((..(--------------(....))..--)))))).)))))) ( -22.50)
>DroSec_CAF1 13029 110 - 1
GUUGUGAGGUGAGUUGAAGUGUUUGAUUGCCAAGUGCUUUGGGUACAGCUGUGCUGGGCCAACAAAGUUUCAGUUGGCUGGGCGCUAUUGAUAGAGA--GCAAUUACAUAAU
((((((.(((.(((..(.....)..))))))...((((((..((.(((..(((((.(((((((.........))))))).)))))..)))))..)))--)))....)))))) ( -37.40)
>DroSim_CAF1 12303 110 - 1
GUUGUGAGGUGAGUUGAAGUGUUUGAUUGCCAAGUGCUUUGGGUACAGCUGUGCUGGGCCAACAAAGUUUCAGUUGGCUGGGCGCUAUUGAUAGAGA--GCAAUUACAUAAU
((((((.(((.(((..(.....)..))))))...((((((..((.(((..(((((.(((((((.........))))))).)))))..)))))..)))--)))....)))))) ( -37.40)
>DroEre_CAF1 20635 107 - 1
--AGGGAGGUGAGCUGAAGUGUUUGAUUGCCAAGUGCUUUGGGUACAGCUGUGCUGGGCUAACUAAGUUGCAGUUGGGUGGACGCUUUUGAUAU-GA--GCAAUUACAUUAU
--..((((((((.(..(((..((((.....))))..)))..).).((((((((((((.....)).)).))))))))......)))))))(((.(-((--....))).))).. ( -27.80)
>DroYak_CAF1 19988 108 - 1
--AGGGAGGUGAGUUGAAGUGUUUGAUGGCCAAGUGCUUUGGGUACAGCUGUGCUGGGCCAACUACGUUGCAGUUGGGUGGGCGCUAUUGAUAGAGA--GGCAUUACAUAAA
--.....(((..((..(.....)..)).))).((((((((..((.(((..(((((.(.((((((.......)))))).).)))))..)))))...))--))))))....... ( -32.50)
>DroPer_CAF1 12450 76 - 1
GCCGUGGCGUA---UG---------------GAGUGCUUAAGGUACAGUCGCGCGGGGCUGA---AG-CUCAGU--------------CCAGAGCGGCCAAAACAGCCUAAA
.....(((...---..---------------..((((.....)))).(((((...((((((.---..-..))))--------------))...))))).......))).... ( -28.00)
>consensus
GUUGUGAGGUGAGUUGAAGUGUUUGAUUGCCAAGUGCUUUGGGUACAGCUGUGCUGGGCCAACAAAGUUUCAGUUGG_UGGGCGCUAUUGAUAGAGA__GCAAUUACAUAAU
........((((..(((((..((((.....))))..)))))((..((((...))))..))...........................................))))..... (-11.24 = -12.53 +   1.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:16 2006