Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,026,957 – 2,027,061 |
Length | 104 |
Max. P | 0.823976 |
Location | 2,026,957 – 2,027,061 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.68 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -24.79 |
Energy contribution | -25.02 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.26 |
Mean z-score | -1.51 |
Structure conservation index | 0.78 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2026957 104 - 23771897 ACGAUGACGAAGGCGAAUACACCGUCAAGCUUGUCAACCCGGUUGGCGAGGCGGAGGCCAGCCUCCAUUUGGUCAUAAUGCGUAAGUAGCCCUGCUUAUAUUUG ...(((((.((((((.......))))...(((((((((...)))))))))..(((((....)))))..)).))))).....(((((((....)))))))..... ( -34.70) >DroVir_CAF1 87308 104 - 1 ACGAUGACGAGGGCGAGUAUACGGUUAAGCUUGUAAAUCCUGUGGGUGAGGCAGAAGCCAGCCUACAUUUGGUCAUUAUGCGUAAGUAUAAAAAAUUAAUUACA ..((((((((..((((((.((....)).))))))...)).(((((((..(((....))).)))))))....))))))((((....))))............... ( -30.50) >DroGri_CAF1 73723 104 - 1 ACGAUGACGAGGGCGAGUACACAGUUAAACUUGUCAAUCCCGUGGGCGAGGCAGAGGCCAGCCUACACUUGGUCAUUAUGCGUAAGUAUAAUUAAUUAAUUACA ..((((((((((((((((..........)))))))......((((((..(((....))).)))))).))).))))))((((....))))............... ( -33.60) >DroMoj_CAF1 87590 104 - 1 ACGAUGACGAGGGCGAGUACACUGUUAAACUUGUGAAUCCUGUGGGCGAGGCAGAGGCCAGCCUGCACUUGCUCAUUAUGCGUAAGUAUAUAAAAUUAAUUACA ..........((((((((.(((..........)))......(..(((..(((....))).)))..)))))))))..(((((....))))).............. ( -32.30) >DroAna_CAF1 76434 98 - 1 ACGAUGACGAAGGCGAGUACACCGUCAAGCUUGUCAACCCAGUCGGCGAUGCGGAAGCCAGUCUGCACUUGGUCAUUAUGCGUAAGUAC------UUCGCAAGG ..((((((.(((((((((..........)))))).......((.(((...((....))..))).)).))).)))))).((((.......------..))))... ( -27.30) >DroPer_CAF1 113372 103 - 1 ACGAUGACGAGGGCGAGUACACGGUGAAGCUGGUGAAUCCCGUGGGCGAGGCAGAGGCCAGCCUACAUUUGGUUAUAAUGCGUAAGUACAACAGCUGCCA-CUG .....................(((((.(((((.((......((((((..(((....))).))))))............(((....))))).)))))..))-))) ( -32.50) >consensus ACGAUGACGAGGGCGAGUACACCGUUAAGCUUGUCAAUCCCGUGGGCGAGGCAGAGGCCAGCCUACACUUGGUCAUUAUGCGUAAGUAUAAAAAAUUAAUUACA ..((((((.(((((((((..........)))))).......((((((..(((....))).)))))).))).)))))).(((....)))................ (-24.79 = -25.02 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:30 2006