| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,372,525 – 18,372,615 |
| Length | 90 |
| Max. P | 0.546577 |
| Location | 18,372,525 – 18,372,615 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -18.47 |
| Consensus MFE | -10.34 |
| Energy contribution | -10.73 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18372525 90 - 23771897 AAAAAAACUGCGGAUCUGGGCAAAUUGAAGUCAGAAGCGUAAAAGCGCAUUUGCAACAGAAGUUUUAAA-UAAGCUCAAAAAUGCGGUGAC ......((((((..((((.((((((((....)))..((((....)))).)))))..))))(((((....-.)))))......))))))... ( -21.70) >DroSec_CAF1 9301 87 - 1 ---AAAACUGCGGAUCUGGACAAAUUGAAGUCACAAGCGUAAAAGCGCAUUUGCAACAGAAGUUUCAUA-UAAGCUCAAAAAUGCGGUGGC ---...((((((..(((((((........)))....((((....))))........))))(((((....-.)))))......))))))... ( -19.10) >DroSim_CAF1 8579 87 - 1 ---AAAACUGCGGAUCUGGGCAAAUUGAAGUCAGAAGCGUAAAAGCGCAUUUGCAACAGAAGUUUCAAA-UAAGCUCGAAAAUUCGGUGGC ---....(..(.((..(((((...............((((....))))(((((.(((....))).))))-)..))))).....)).)..). ( -18.90) >DroEre_CAF1 16790 87 - 1 ---AAAACUGCGGAUCUGGGCAAAUGGAAGUCAAAAGCGUAAAAGCGCAUUUGCAACAGAAGUUUCGAG-CAAGCUUAAAAAAACAGUGGC ---...((((....((((.((((((((....)....((......)).)))))))..))))..(((..((-....))..)))...))))... ( -18.10) >DroYak_CAF1 15233 85 - 1 ----AAACUGCGGAUCUGGGCAAAUGGAAGUCAAAAGCGUAAAAGCGCAUUUGCAACAGAAGUUUCAAA-AAAGCUUAAA-AAACGGUGGC ----...(..(.(.((((.((((((((....)....((......)).)))))))..))))(((((....-.)))))....-...).)..). ( -17.50) >DroMoj_CAF1 127565 73 - 1 ---A-----GCGGCUCUGGCCAAAUUGAAGUCAAAAGCGUAAAAGCGCAUUUGCAACAAUUAUUAAAAAAAAAAAUACAC-A--------- ---.-----..(((....))).(((((..(.((((.((((....)))).)))))..)))))...................-.--------- ( -15.50) >consensus ___AAAACUGCGGAUCUGGGCAAAUUGAAGUCAAAAGCGUAAAAGCGCAUUUGCAACAGAAGUUUCAAA_UAAGCUCAAAAAUACGGUGGC ........(((((((...(((........)))....((((....))))))))))).................................... (-10.34 = -10.73 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:15 2006