Locus 6848

Sequence ID 3L_DroMel_CAF1
Location 18,369,854 – 18,369,955
Length 101
Max. P 0.672640
window11107

overview

Window 7

Location 18,369,854 – 18,369,955
Length 101
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -20.53
Consensus MFE -13.48
Energy contribution -13.65
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.66
SVM decision value 0.30
SVM RNA-class probability 0.672640
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18369854 101 - 23771897
CGAGCUUCUGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCCAAACUCUCGCUUAUCAAU--CCUC------------AUUCUA--CACUGACAAAAACAA
.((((...(((((((.......)))))))...........(((.(((...))).))).........))))......--....------------......--............... ( -15.30)
>DroPse_CAF1 6352 103 - 1
GGAGCAUCAGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCGAAU--CGCUCUUAUCAAUGGCCCCCACCCCCACCCCCUCCCC--CGCUC----------
(((((....((((((.......))))))........(((((((.(((...))).)))))))--.)))))...............................--.....---------- ( -21.50)
>DroEre_CAF1 14013 100 - 1
CGAGCUUCUGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCGAAACUCUCUCUUAUCAAU--CCUC------------CUUCUA--CACUGGC-AAAACAA
.(((.((((((((((.......)))))))...........(((.(((...))).)))))).)))............--....------------......--.......-....... ( -17.10)
>DroYak_CAF1 12612 100 - 1
CGAGCUUCUGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCGAAACUCUCUCUUAUCAAU--CCGC------------CUUCUA--CACUGGA-AAAACAG
.(((.((((((((((.......)))))))...........(((.(((...))).)))))).)))............--....------------......--..(((..-....))) ( -18.80)
>DroAna_CAF1 5997 96 - 1
UGAGCUUCUGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCGAACCG--UUGUUAUCAAUGGCCUC------------AGUCUGUCUACGGACA-------
((((....(((((((.......)))))))........((((((.(((...))).))))))(((--(((....)))))).)))------------)(((((....))))).------- ( -29.00)
>DroPer_CAF1 6312 96 - 1
GGAGCAUCAGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCGAAU--CGCUCUUAUCAAUGCCCCCCCC-------CCCCUCCC--CGCUC----------
(((((....((((((.......))))))........(((((((.(((...))).)))))))--.)))))................-------........--.....---------- ( -21.50)
>consensus
CGAGCUUCUGUGCCAAUGCAAAUGGCGCAUUAAAAAAUUUGCAAAUGUCACGUAUGCGAAACUCUCUCUUAUCAAU__CCUC____________CUUCUA__CACUG_C________
.((......((((((.......)))))).........((((((.(((...))).))))))...........))............................................ (-13.48 = -13.65 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:14 2006