Locus 6844

Sequence ID 3L_DroMel_CAF1
Location 18,359,899 – 18,360,018
Length 119
Max. P 0.764674
window11100

overview

Window 0

Location 18,359,899 – 18,360,018
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 86.92
Mean single sequence MFE -30.95
Consensus MFE -22.77
Energy contribution -23.65
Covariance contribution 0.88
Combinations/Pair 1.19
Mean z-score -1.84
Structure conservation index 0.74
SVM decision value 0.51
SVM RNA-class probability 0.764674
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18359899 119 - 23771897
AAUAAGAAAAAAUUAUGACAAGAGGACGAUGCGUGACCGCCAUUCGCAGUCAGGAUAUGCCUUGAAUUUAGGUAAAAGGAAACUUUUCCGCAACGGUGGUGAAGCAAAUCACGCAAGAU
.............................((((((((((((.((.((..(((((......))))).....((.(((((....))))))))))).))))).........))))))).... ( -31.50)
>DroSec_CAF1 143944 118 - 1
AAUAAGAA-AAAUUAUGACAAGAGGACGAUGCGUGACCGCCUAUCGCAGCCAGGAUAUGCCUUGAAUUUAGGUAGAAGGAAACUUUUCCGCAACGGUGGUGAAGCAAAUCACGCAAGAU
........-....................(((((((..((...((((.(((.(((..(((((.......)))))((((....))))))).....))).)))).))...))))))).... ( -30.10)
>DroSim_CAF1 154460 118 - 1
AAUAAGAA-AAAUUAUGACAAGAGGACGAUGCGUGACCGCCUAUCGCAGUCAGGAUAUGCCUUGAAUUUAGGUAAAAGGAAACUUUUCCGCAACGGUGGUGAAGCAAAUCACGCAAGAU
........-....................((((((((((((....((..(((((......))))).....((.(((((....)))))))))...))))).........))))))).... ( -30.70)
>DroAna_CAF1 140445 106 - 1
AAUAAGAA--AAUUAUGACAAGAAGGCGAUGCGUGACCGCUUUUCACCGUCAGGAUGUGCGUUC-----------AAGGAAACUUUCCCUUCACGGCGGUGGAGCAAAUCACGCAAGAU
........--...................(((((((..((((..(((((((.((((....))))-----------(((....))).........)))))))))))...))))))).... ( -31.50)
>consensus
AAUAAGAA_AAAUUAUGACAAGAGGACGAUGCGUGACCGCCUAUCGCAGUCAGGAUAUGCCUUGAAUUUAGGUAAAAGGAAACUUUUCCGCAACGGUGGUGAAGCAAAUCACGCAAGAU
.............................(((((((..((..(((((.((((((.....)))........((.(((((....))))))).....))).)))))))...))))))).... (-22.77 = -23.65 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:07 2006