Locus 6841

Sequence ID 3L_DroMel_CAF1
Location 18,358,578 – 18,358,676
Length 98
Max. P 0.803965
window11096

overview

Window 6

Location 18,358,578 – 18,358,676
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 89.38
Mean single sequence MFE -22.50
Consensus MFE -18.30
Energy contribution -18.30
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -2.43
Structure conservation index 0.81
SVM decision value 0.63
SVM RNA-class probability 0.803965
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18358578 98 + 23771897
AAUCACCUUCGCGCAUUCUGACUUAUUCUGUAUUUAAAGAUUCAAAGAUAGAACCAAGAUGUUAAGUAAAUAUCUUGGGGAAAGUAAUCCGUAAAGGU
....(((((..(...(((((.(((..(((........)))....))).)))))((((((((((.....))))))))))(((......))))..))))) ( -26.20)
>DroSec_CAF1 142644 96 + 1
UAUCAUCUUAGC--AGACUGACUUAUUCUGCAUUUAAAGAUCCAAAGAUAAAACCAAGAUGUUAAGGAAAUAUCUUGGGGAAAGUAAUCCGCAAAGGU
..........((--(((.........)))))..........((..........((((((((((.....))))))))))(((......))).....)). ( -21.20)
>DroSim_CAF1 153159 96 + 1
AAUCAUCUUUAC--AGACUGACUUAUUCUGUGGUUAAAGAUUCAAAGAUAAAACCAAGAUGUUAAGGAAAUAUCUUGGGGAAAGUAAUCCGCAAAGGU
....((((((.(--.((...((((..(((.(((........))).))).....((((((((((.....))))))))))...))))..)).).)))))) ( -20.10)
>consensus
AAUCAUCUUAGC__AGACUGACUUAUUCUGUAUUUAAAGAUUCAAAGAUAAAACCAAGAUGUUAAGGAAAUAUCUUGGGGAAAGUAAUCCGCAAAGGU
....(((((.((.........(((..(((........)))....)))......((((((((((.....))))))))))(((......))))).))))) (-18.30 = -18.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:04 2006