Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,353,126 – 18,353,227 |
Length | 101 |
Max. P | 0.925308 |
Location | 18,353,126 – 18,353,227 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -21.35 |
Energy contribution | -22.02 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.46 |
Structure conservation index | 0.80 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18353126 101 + 23771897 C-C---------UCCCC-AC-CGAAAAAAAGGAUUUCCACCCACUUCUACGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA .-.---------.....-..-(((......((....))..(.((((((..((((........))))(((((((..((((....))))...)))))))..)))))).).))).. ( -26.70) >DroSec_CAF1 137264 99 + 1 CCC---------UUCCCCCC-CGAA-AAAAGGAUUCC---CCACUUCUCCGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA .((---------((......-....-..)))).....---.........(((..((((..((((..(((((((..((((....))))...))))))).))))))))..))).. ( -25.60) >DroSim_CAF1 147569 98 + 1 CCC---------UUCCC-AC-CGAA-AAAAGGAUUCC---CCACUUCUCCGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA .((---------((...-..-....-..)))).....---.........(((..((((..((((..(((((((..((((....))))...))))))).))))))))..))).. ( -25.70) >DroEre_CAF1 132732 100 + 1 CCUCCCCUCCGC---------CGAA-AAAAGGACUCC---CCACUUCUCCGAGGAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA ............---------(((.-...(((.((((---.(........).))))))).((((..(((((((..((((....))))...))))))).))))......))).. ( -26.30) >DroYak_CAF1 143515 108 + 1 CCUCUACUUCGCUCCCC-UCCAAAA-AAAAGGAUUCC---CCACUUCUCCGAGGAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA ..((.((((((((((..-(((....-....)))....---...(......).))))).........(((((((..((((....))))...)))))))...))))).))..... ( -30.60) >DroAna_CAF1 132312 95 + 1 U-----C-----UCC---UU-CUCC-AAAAGGUCUCC---CCAUUUUUGCAAGGAGCUUAUCUCAUGGAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCUAA (-----(-----..(---((-((..-...(((.((((---.((....))...)))))))......((((((((..((((....))))...))))).))))))))..))..... ( -24.40) >consensus CCC_________UCCCC_AC_CGAA_AAAAGGAUUCC___CCACUUCUCCGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA ..............................((........)).......(((..((((..((((..(((((((..((((....))))...))))))).))))))))..))).. (-21.35 = -22.02 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:01 2006