Locus 6837

Sequence ID 3L_DroMel_CAF1
Location 18,345,723 – 18,345,834
Length 111
Max. P 0.626129
window11090

overview

Window 0

Location 18,345,723 – 18,345,834
Length 111
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -29.57
Consensus MFE -18.73
Energy contribution -19.32
Covariance contribution 0.59
Combinations/Pair 1.28
Mean z-score -1.54
Structure conservation index 0.63
SVM decision value 0.19
SVM RNA-class probability 0.626129
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18345723 111 - 23771897
UGCUUUCCCAGCUGCGAUGAGCCUUUUAAAGGCUUAGC-CAGAUAAAAGCUGGUUAAACAGCGAAAUUAGUGUCAUUGUCACAGAAGGCGGGAAAUUUG-------GACUUGAAAAUUA
...((((((........(((((((.....)))))))((-(........((((......)))).......(((.......)))....)))))))))....-------............. ( -31.10)
>DroSec_CAF1 130097 111 - 1
UGCUUUCCCAGCUGCGAUGAGCCUUUUAAAGGCUUAGU-CGGAUAAAAGCUGGUUAAACAGCGAAAUUAGUGUCAUUGUAGCAGAAGGCGGGAAAUUUG-------AACACGAAAAUUA
.((((((...((((((((((((((.....)))).....-.........((((......))))..........)))))))))).))))))....(((((.-------.......))))). ( -33.10)
>DroSim_CAF1 140275 111 - 1
UGCUUUCCCAGCUGCGAUGAGCCUUUUAAAGGCUUAGC-CGGAUAAAUGCUGGUUAAACAGCGAAAUUAGUGUCAUUGUCACAGAAGGCGGGAAAUUUG-------AACACGAAUAUUA
....(((((........(((((((.....)))))))((-(.......(((((......)))))......(((.......)))....))))))))(((((-------....))))).... ( -31.30)
>DroEre_CAF1 125627 109 - 1
UGCUUUCCCAGCUGCGCUGAGCCUUUUAAAGGCUUAGC-CGGAUGAAAGCUGGUUAAACAGCGAAUUUAGUGUCACUGUGACAAGA-GCGAGAAAUUUU-------AGCAGGAU-AUGA
...((((....(((.(((((((((.....)))))))))-)))..))))((((......)))).......(((((.((((...((((-........))))-------.)))))))-)).. ( -33.80)
>DroYak_CAF1 136478 109 - 1
CGCUUUCCCAGCUGCGAUGAGCCUUUUAAAGGCUUAGC-AAGAUAAAAGCUGGUUAAAUAGGGAGUUUAGUGUCAUUGUCAUAAAAGGCGGGAAAUUUG-------AGCAUGAA-AU-A
.((((..((((((.(..(((((((.....)))))))..-..).....)))))).........((((((..((((.((......)).))))..)))))))-------))).....-..-. ( -27.70)
>DroAna_CAF1 126314 114 - 1
---UUUCACAGCUGGGAUGAGCCAUUUAAGGGCUAAGCUUAGAUAAUAGCCGGUUAAACAGGAAAAUUAGUGGCGUCG--ACAGAAGCAAAAAAAUGUGGUGUUUGAAGUUUGAAAUUC
---(((((.((((....(((((((((....(((((...........)))))(......).........)))))).)))--.((((.(((......)))....)))).)))))))))... ( -20.40)
>consensus
UGCUUUCCCAGCUGCGAUGAGCCUUUUAAAGGCUUAGC_CAGAUAAAAGCUGGUUAAACAGCGAAAUUAGUGUCAUUGUCACAGAAGGCGGGAAAUUUG_______AACAUGAAAAUUA
...((((((..(((...(((((((.....)))))))...)))......((((......)))).........(((.((......)).)))))))))........................ (-18.73 = -19.32 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:58 2006