Locus 6836

Sequence ID 3L_DroMel_CAF1
Location 18,344,151 – 18,344,270
Length 119
Max. P 0.522064
window11089

overview

Window 9

Location 18,344,151 – 18,344,270
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.76
Mean single sequence MFE -19.26
Consensus MFE -5.94
Energy contribution -7.10
Covariance contribution 1.16
Combinations/Pair 1.07
Mean z-score -1.67
Structure conservation index 0.31
SVM decision value -0.02
SVM RNA-class probability 0.522064
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18344151 119 + 23771897
AAAUGGACUCUAUCUAGACCUUAGGUAACCAAAAAUAUAUAAACGUAUUCAAUUUAAUGUUCAAGCAUCCCAAAUUGAACAGCCUCACUAAAUCUUU-UUACUUAGGAAUGGGUAGUCGA
.....((((..(((((...(((((((((.....(((((......)))))........(((((((..........)))))))................-)))))))))..))))))))).. ( -20.70)
>DroSec_CAF1 128526 110 + 1
AAAUGGCCUCUAUCUAGGUCUUUGGUAACCAAAAAU----------AUUCUAUUUAAUGUUCAAGCAUCCCAAAUUGAACAGCCCCACUAAAUCUUUAUUACUAAGGACUUGGUAUUCGA
.............(((((((((((((((....((((----------(...)))))..(((((((..........))))))).................)))))))))))))))....... ( -22.20)
>DroSim_CAF1 138686 110 + 1
AAAUGGCCUCUAUCUAGGUCUUUAGUAACCAAAAAU----------AUUCUAUUUAAUGUUCAAGCAUCCCAAAUUGAACAGCCCCACUAAAUCUUUAUUACUAAGGACUUGGUAUUCGA
.............(((((((((((((((....((((----------(...)))))..(((((((..........))))))).................)))))))))))))))....... ( -22.50)
>DroEre_CAF1 124088 96 + 1
AAAUGGCUU-------------------CCCAAAAUAUAGAAAUGUACUUCAGUUAAUGUUCAAGCAUCCCAAAUUUAACAGCCAAACUAUACCCUUUCUAAUAAGGA-----UAGUCGA
...(((((.-------------------.......((((....)))).....((((((((....))))........))))))))).(((((..((((......)))))-----))))... ( -14.60)
>DroYak_CAF1 134935 119 + 1
AAAUGGCUUUUCGCU-GACCUCAAGUAACCAAAUAUACAAAAAUUCACUUCAUUUAAUGUUCAAGCAUCCCAAAUUUAACAGCCAAACUAUAUCCUUUCUAAUAAGGACUGGGUAGUCGA
...(((((.((((((-(.......(((........)))..................((((....))))...........)))).........(((((......)))))..))).))))). ( -16.30)
>consensus
AAAUGGCCUCUAUCUAGACCUUAAGUAACCAAAAAUA_A_AAA___AUUCCAUUUAAUGUUCAAGCAUCCCAAAUUGAACAGCCACACUAAAUCUUUAUUACUAAGGACUGGGUAGUCGA
...........................(((...........................(((((((..........)))))))...........(((((......)))))...)))...... ( -5.94 =  -7.10 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:57 2006