| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,342,655 – 18,342,760 |
| Length | 105 |
| Max. P | 0.507301 |
| Location | 18,342,655 – 18,342,760 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.25 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -14.95 |
| Energy contribution | -16.40 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18342655 105 + 23771897 UUUC------CAUUUCCACCUACCCCUACCGAUACUUCCUCUGCCUUUUUUUUUACUUUUCGGUAAUGUGGCGCACAUGCAAAGCCGCAGGAUUAGGCACAACUGUGAUCC ....------........((((..((((((((...........................)))))).((((((((....))...))))))))..))))(((....))).... ( -23.23) >DroPse_CAF1 153122 90 + 1 UAGC------C-------CAUAGCCCUCC---UCUUUGCUCGUCCUUU---UCUAUUUUUUUU--UUUUUGGGUAGAUGCAAAGCCACAGGAUUAGGCACAACUGUGCUCC ....------.-------........(((---(((((((((..(((..---............--.....)))..)).))))))....))))...(((((....))))).. ( -18.01) >DroSec_CAF1 127049 102 + 1 UUUC------CGUUUCCACCUACCCCUACCGAUGCUUCCUCUGCCUUU---UUUACUUUUCGGUAAUGUGGCGCACAUGCAAAGCCGCAGGAUUAGGCACAACUGCGAUCC ....------(((.....((((..((((((((.((.......))....---........)))))).((((((((....))...))))))))..)))).......))).... ( -23.32) >DroSim_CAF1 137266 104 + 1 UUUC------CAUUUCCACCUACCCCUACCGAUGCUUCCUCUGCCUUUU-UUUUACUUUUCGGUAAUGUGGCGCACAUGCAAAGCCGCAGGAUUAGGCACAACUGUGAUCC ....------........((((..((((((((.................-.........)))))).((((((((....))...))))))))..))))(((....))).... ( -23.27) >DroEre_CAF1 122649 107 + 1 UUUCCACU-CCACUUCCACCUACCCCUACCGAUACUUCCUCUGCCUUU---UUUACUCUUCGGUAAUGUGGCGCACAUGCAAAGCCGCAGGAUUAGGCACAACUGUGAUCC ........-.........((((..((((((((................---........)))))).((((((((....))...))))))))..))))(((....))).... ( -23.36) >DroYak_CAF1 133416 109 + 1 UUUCCACUUCCAUUUCCACCUACCCCUACCGAUACUUCCUCUGCCUUU--UUUUACUUUUUGGUAAUGUGGCGCACAUGCAAAGCCGCAGGAUUAGGCACAACUGUGAUCC ..................((((..((((((((................--.........)))))).((((((((....))...))))))))..))))(((....))).... ( -21.21) >consensus UUUC______CAUUUCCACCUACCCCUACCGAUACUUCCUCUGCCUUU___UUUACUUUUCGGUAAUGUGGCGCACAUGCAAAGCCGCAGGAUUAGGCACAACUGUGAUCC ..................((((..((((((((...........................)))))).((((((((....))...))))))))..))))(((....))).... (-14.95 = -16.40 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:56 2006