Locus 6831

Sequence ID 3L_DroMel_CAF1
Location 18,336,560 – 18,336,675
Length 115
Max. P 0.993704
window11080

overview

Window 0

Location 18,336,560 – 18,336,675
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 96.87
Mean single sequence MFE -18.58
Consensus MFE -16.16
Energy contribution -16.40
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.87
SVM decision value 2.42
SVM RNA-class probability 0.993704
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18336560 115 + 23771897
UGACAAUUGGCACAAUAAAUAGUCUCAACUUACAAAUAUCUCUGUGACCCUCCCUCAUUUUGGAUCUCCAAUUACCUUCACAUUAAGUUGUGAUAUAAACACCCCAAUUGUUGUC
.(((((((((...........(((.(((((((...........((((.......)))).((((....))))............))))))).))).........)))))))))... ( -21.65)
>DroSec_CAF1 120795 115 + 1
UGACAAUUGGCACAAUAAAUAGUCUCAACUUUCAAAUAUCUCUGCGACCGUCCCUCAUUUUGGAUCUCCAAUUACCUUCACAUUAAAUUGUGAUAUAAACACCCCAAUUGUUGUC
.(((((((((...........(((.((...............)).)))...........((((....))))......(((((......)))))..........)))))))))... ( -19.16)
>DroSim_CAF1 130892 115 + 1
UGACAAUUGGCACAAUAAAUAGUCUCAACUUUCAAAUAUCUCUGCGACCCUCCCUCAUUUUGGAUCUCCAAUUACCUUCACAAUAAAUUGUGAUAUAAACACCCCAAUUGUUGUC
.(((((((((...........(((.((...............)).)))...........((((....))))......((((((....))))))..........)))))))))... ( -19.06)
>DroEre_CAF1 116796 115 + 1
UGACAAUUGGCACAAUAAAUAGUCUCAACUUUCAAAUAUCUCUGCGACCCUCCCUCAUUUAGGAUCUCCAAUUACCUGCACAUUAAAUUGUGAUAUAAACACCCCAAUUGUUGGC
.(((((((((((((((.....(((.((...............)).))).............((....)).................))))))...........)))))))))... ( -16.56)
>DroYak_CAF1 127323 115 + 1
UGACAAUUGGCACAAUAAAUAGUCUCAACUUUCAAAUAUCUCUGCGACCCUCCCUCAUUUUAGAUCUCCAAUUACCUUCACAUUAAAUUGUGAUAUAAACACCCCAAUUGUUGUC
.(((((((((...........(((.((...............)).))).............................(((((......)))))..........)))))))))... ( -16.46)
>consensus
UGACAAUUGGCACAAUAAAUAGUCUCAACUUUCAAAUAUCUCUGCGACCCUCCCUCAUUUUGGAUCUCCAAUUACCUUCACAUUAAAUUGUGAUAUAAACACCCCAAUUGUUGUC
.(((((((((((((((.....(((.((...............)).)))...........((((....))))...............))))))...........)))))))))... (-16.16 = -16.40 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:49 2006