Locus 6830

Sequence ID 3L_DroMel_CAF1
Location 18,334,839 – 18,334,929
Length 90
Max. P 0.677260
window11079

overview

Window 9

Location 18,334,839 – 18,334,929
Length 90
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 84.07
Mean single sequence MFE -20.71
Consensus MFE -14.61
Energy contribution -15.72
Covariance contribution 1.11
Combinations/Pair 1.20
Mean z-score -2.46
Structure conservation index 0.71
SVM decision value 0.30
SVM RNA-class probability 0.677260
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18334839 90 - 23771897
CUGUCAGUCACCAAAAAAGGGUUGAUUUGCCACCACC-------CACCCUUUAACCCUUAACAGCGGGCUUAUCCCA----AUCCCGUUGACCAACGACAA
.((((...........(((((((((............-------......)))))))))..(((((((.((.....)----).)))))))......)))). ( -24.27)
>DroSec_CAF1 119096 87 - 1
CUGUCACUCAGCAAAAAAGGGUUGAUUUGCC---ACC-------CACCCUUUAACCCUUGACAGCAGGCUUUUCCCA----ACCCCGUUGACCAGCGACAA
.((((.....((....(((((((((......---...-------......)))))))))....))..(((.....((----((...))))...))))))). ( -19.76)
>DroSim_CAF1 129183 87 - 1
CUGUCAGUCACCAAAAAAGGGUUGAUUUGCC---ACC-------CACCCUUUAACCCUUGACAGCGGGCUUUUCCCA----ACCCCGUUGACCAGCGACAA
.((((...........(((((((((......---...-------......)))))))))..(((((((.((.....)----).)))))))......)))). ( -24.26)
>DroEre_CAF1 114864 87 - 1
CUGUCAGUCACCAAAAAAGGGUUGAUUUGCC---ACC-------CACCCUUUAACCCUUGACAGCGGCCUUUUCCCA----ACCCCGUUGACCAGCGACAA
.((((...........(((((((((......---...-------......)))))))))..((((((..........----...))))))......)))). ( -20.58)
>DroYak_CAF1 125598 87 - 1
CUGCCAGUCACCAAAAAAGGGUUGAUUCGCC---ACC-------CACCCUUUAACCCUUGACAGCGGGCUUUUCCCA----ACCCCCUUGACCAGCGACAA
.(((..((((......(((((((((......---...-------......)))))))))......(((.....))).----.......))))..))).... ( -19.56)
>DroAna_CAF1 116847 97 - 1
CUGUCAGUCACCAAAUAAGGGUUGAAUUACC---ACCCCCCAGCCACCCACAAGUCCUUGGCAACUGGCUUAUCCCACUCCAUCCUUUUGACC-GUUCCGA
..((((((..........(((.((......)---).)))...((((............)))).))))))........................-....... ( -15.80)
>consensus
CUGUCAGUCACCAAAAAAGGGUUGAUUUGCC___ACC_______CACCCUUUAACCCUUGACAGCGGGCUUUUCCCA____ACCCCGUUGACCAGCGACAA
.((((...........(((((((((.........................)))))))))..(((((((...............)))))))......)))). (-14.61 = -15.72 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:48 2006