Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,331,758 – 18,331,872 |
Length | 114 |
Max. P | 0.764908 |
Location | 18,331,758 – 18,331,872 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -24.90 |
Energy contribution | -24.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.92 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18331758 114 - 23771897 AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCUGCU-----UCCCAAAGCA-AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGACCC .(((((((((((.(.....).).))))))).........((((((..(((((....)))))((((-----(....)))))-...(((........)))...))))))..)))........ ( -28.20) >DroPse_CAF1 140922 109 - 1 AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCC--------UCCC-AAGCA-GAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAAA- .(((((((((((.(.....).).))))))).........((((((..(((((....))))).--------....-..(((-...((....))..)))....))))))..))).......- ( -25.80) >DroEre_CAF1 111789 114 - 1 AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCUGCU-----UCCCGCAGCA-AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGACCC .(((((((((((.(.....).).))))))).........((((((..............(((((.-----....))))).-...(((........)))...))))))..)))........ ( -28.60) >DroYak_CAF1 122405 114 - 1 AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCUGCU-----UCCCGCAGCA-AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGACCC .(((((((((((.(.....).).))))))).........((((((..............(((((.-----....))))).-...(((........)))...))))))..)))........ ( -28.60) >DroAna_CAF1 113982 120 - 1 AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCCGCCGCGCCGCCUGCACCAAAAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAACC .(((((((((((.(.....).).))))))).........((((((..(((((....)))))....(((......(((.......))).......)))....))))))..)))........ ( -25.92) >DroPer_CAF1 141749 109 - 1 AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCC--------UCCC-AAGCA-GAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAAA- .(((((((((((.(.....).).))))))).........((((((..(((((....))))).--------....-..(((-...((....))..)))....))))))..))).......- ( -25.80) >consensus AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCCGCU_____UCCCGAAGCA_AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAACC .(((((((((((.(.....).).))))))).........((((((..(((((....))))).......................(((........)))...))))))..)))........ (-24.90 = -24.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:46 2006