Locus 6827

Sequence ID	3L_DroMel_CAF1
Location	18,329,784 – 18,329,876
Length	92
Max. P	0.824195

overview

Window 6

Location	18,329,784 – 18,329,876
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	97.39
Mean single sequence MFE	-30.70
Consensus MFE	-29.96
Energy contribution	-30.40
Covariance contribution	0.44
Combinations/Pair	1.04
Mean z-score	-1.26
Structure conservation index	0.98
SVM decision value	0.69
SVM RNA-class probability	0.824195
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18329784 92 - 23771897
GACGCUUGCGGAUCGCCUUCAAAAUGCUCGGCACAAUGGAAAAGACCACCCGCUGGGAAAAUAGCGUGGAGCAGGCGGCGACAUCUUAGCAA
...(((...((((((((.((....(((((.((....(((......)))...((((......)))))).))))))).)))))..))).))).. ( -28.90)
>DroSec_CAF1 113968 92 - 1
GACGCUUGCGGAUCGCCUUCAAAGUGCUCGGCACAAUGGAAAAGACCACCCGCUGGGAAAAUAGCGUGGAGCAGGCGGCGACAUCUUAGCAA
..(((((((((.((...((((..((((...))))..))))...)))).(((((((......))))).)).)))))))((.........)).. ( -32.20)
>DroSim_CAF1 124054 92 - 1
GACGCUUGCGGAUCGCCUUCAAAGUGCUCGGCACAAUGGAAAAGACCACCCGCUGGGAAAAUAGCGUGGAGCAGGCGGCGACAUCUUAGCAA
..(((((((((.((...((((..((((...))))..))))...)))).(((((((......))))).)).)))))))((.........)).. ( -32.20)
>DroEre_CAF1 109732 92 - 1
GACGCUCGCGGAUCGCCUUCAAAGUGCUCGGCACAAUGGAAAAGACCACCCGCUGGGAAAAUAGCGUGGAGCAGGCGGCGACAUCUCAGCAA
..(((..((((.((...((((..((((...))))..))))...)))).(((((((......))))).)).))..)))((.........)).. ( -28.50)
>DroYak_CAF1 120381 92 - 1
GACGCCUGCGGAUCGCCUUCAAAGUGCUCGGCACAAUGGAAAAGCCCACCCGCUGCGAAAAUAGCGUGGAGCAGGCGGCGACAUCUUAGCAA
..(((((((((...((.((((..((((...))))..))))...)))).(((((((......))))).)).)))))))((.........)).. ( -31.70)
>consensus
GACGCUUGCGGAUCGCCUUCAAAGUGCUCGGCACAAUGGAAAAGACCACCCGCUGGGAAAAUAGCGUGGAGCAGGCGGCGACAUCUUAGCAA
..(((((((((.((...((((..((((...))))..))))...)))).(((((((......))))).)).)))))))((.........)).. (-29.96 = -30.40 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:45 2006