| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,329,317 – 18,329,412 |
| Length | 95 |
| Max. P | 0.766113 |
| Location | 18,329,317 – 18,329,412 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.01 |
| Mean single sequence MFE | -28.53 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.28 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18329317 95 + 23771897 GACACACAUGGCCAGGACGCGCUUGAAAAAUUGCACCAA-----------------------GCUACACAAUGGCA--UAGAAGCAGCUAAAUUUAUGGCCCAACAUUUUGGCCAAGAGG ........(((((((((.((((..........)).....-----------------------((((.....)))).--.....)).((((......))))......)))))))))..... ( -21.80) >DroPse_CAF1 137652 119 + 1 GACACACAUGGCCGAGACGCGCUUGAAAAAUUGCAGCCAUGCGAAGGAUAGCACCGGCACCAGCUAAACAAUGGCCAAGAGCAGCGGCCAAAUUUAUGACCCGCCAU-UUGGCCAAAAAG ........((((((((..((.((((..........(((.(((........)))..)))....((((.....)))))))).)).((((.((......))..))))..)-)))))))..... ( -34.70) >DroEre_CAF1 109262 95 + 1 GACACACAUGGCCAGGACGCGCUUGAAAAAUUGCAGCAA-----------------------GCUACACAAUGGCA--UAGAAGCGGCUAAAUUUAUGGCCAAGCAUUUUGGCCAAGAGG ........(((((((((.(((((((...........)))-----------------------)).........((.--.....))(((((......)))))..)).)))))))))..... ( -29.00) >DroYak_CAF1 119914 95 + 1 GACACACAUGGCCAGGACGCGCUUGAAAAAUUGCACCAG-----------------------GCUACACAAUGGCA--UAGAAGCAGCUGAAUUUAUGGUCAAGCAUUUUGGCCAAGAGG ........(((((((((.(((((((...........)))-----------------------)).......(((((--((((..(....)..))))).)))).)).)))))))))..... ( -26.20) >DroAna_CAF1 111757 100 + 1 GACACACAUGGCCAGGACGCGUUUGAGAAAUCGCACCAA-----AGG-------------CAGCUAAACAAUGGUC--GAGCAGCUGCUAAAUUUAUGGCCAAGCACUUUGGCCAAAAAG ........((((((((..((((.(((....))).))...-----.((-------------(((((...........--....)))))))..............))..))))))))..... ( -26.36) >DroPer_CAF1 138812 113 + 1 GACACACAUGGCCGAGACGCGCUUGAAAAAUUGCAGCCAUGCGAAGGAUAGCA------CCAGCUAAACAAUGGCCAAGAGCAGCGGCCAAAUUUAUGACCCGCCAU-UUGGCCAAAAAG ........((((((((..((.((((.....(((((....))))).(..((((.------...))))..)......)))).)).((((.((......))..))))..)-)))))))..... ( -33.10) >consensus GACACACAUGGCCAGGACGCGCUUGAAAAAUUGCACCAA_______________________GCUAAACAAUGGCA__GAGAAGCGGCUAAAUUUAUGGCCAAGCAUUUUGGCCAAAAAG ........(((((((((.((((..........))............................((((.....))))........)).((((......))))......)))))))))..... (-17.67 = -17.28 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:43 2006