| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,328,777 – 18,328,869 |
| Length | 92 |
| Max. P | 0.991553 |
| Location | 18,328,777 – 18,328,869 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.31 |
| Mean single sequence MFE | -16.72 |
| Consensus MFE | -7.41 |
| Energy contribution | -7.85 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.44 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18328777 92 - 23771897 ----GCAGUC---UCUUUCAAUUAU---AAA-UCCCU------UAAUCAGUUUGGCACAAAUUGCAUUCCUAAUUUGCUUGCCCAACAAUUUUAAUUUCAAAGUUUUCC ----......---............---...-.....------......(((.(((((((((((......)))))))..)))).)))...................... ( -11.10) >DroSec_CAF1 113026 92 - 1 ----GCAGUC---CCUUUCAAUUAU---AAA-UCCCU------UAAUCAGUUUGGCACAAAUUGCAUACCUAAUUUGCUUGCCCAACAAUUUUAAUUUGAAAGUUUUCC ----......---.(((((((...(---((.-....)------))....(((.(((((((((((......)))))))..)))).))).........)))))))...... ( -14.70) >DroSim_CAF1 122869 98 - 1 ----NNNNUU---CCUUUCAAUUAU---AAA-UAACUCCACUCUAGGAGGUUUGGCACAAAUUGCAUACCUAAUAUGCUUGCCCAACAAUUUUAAUUUGAAAGUUUUCC ----......---.(((((((....---(((-(..((((......))))(((.((((......(((((.....))))).)))).))).))))....)))))))...... ( -22.60) >DroEre_CAF1 108721 71 - 1 --------------------------------UCCCC------UAAUCAGUUUGGCGCAAAUUGCAUACCUAAUUUGGUUGCCCAACAAUUUAGGUUUGAAAGUUUGCC --------------------------------....(------(((.....)))).(((((((.((.((((((.(((.........))).)))))).))..))))))). ( -16.30) >DroYak_CAF1 119354 71 - 1 --------------------------------UUUUA------UAAUCAGUUUGGCGCAAAUUGCAUACCUAAUUUGCUUGCCCAACAAUUUUGGUUUGAAAGUUUCCC --------------------------------(((((------.((((((((.(((((((((((......))))))))..))).))).....))))))))))....... ( -13.90) >DroAna_CAF1 111172 101 - 1 UGCCUCAGACCCUCUUUUCAAUUACGUGAAAUUUCUU------UAAUCUAUUUUG-GCAAAUUGCAUAGCUAAUAUGCUUGCCCAGCAAUUUUGGUCAGGUAAA-UUCA (((((..((((....(((((......)))))......------...........(-((((...(((((.....))))))))))..........)))))))))..-.... ( -21.70) >consensus ________UC___CCUUUCAAUUAU___AAA_UCCCU______UAAUCAGUUUGGCACAAAUUGCAUACCUAAUUUGCUUGCCCAACAAUUUUAAUUUGAAAGUUUUCC .................................................(((.(((((((((((......)))))))..)))).)))...................... ( -7.41 = -7.85 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:42 2006