Locus 6822

Sequence ID 3L_DroMel_CAF1
Location 18,325,198 – 18,325,299
Length 101
Max. P 0.610210
window11070

overview

Window 0

Location 18,325,198 – 18,325,299
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.04
Mean single sequence MFE -27.00
Consensus MFE -21.18
Energy contribution -21.49
Covariance contribution 0.31
Combinations/Pair 1.24
Mean z-score -1.72
Structure conservation index 0.78
SVM decision value 0.16
SVM RNA-class probability 0.610210
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18325198 101 - 23771897
AGUU----GGCCACUGGACAUUGCUAGUGGACAGUGGAAUUAAAGUUCUUUUGUUUCUUUUCGUUUGUGCGUCUUCAAGAAGUUUGAACGUUUAUUGCGAAAGAA
....----..((((((..(((.....)))..))))))........(((((((((.......((((((.((.((.....)).)).))))))......))))))))) ( -28.42)
>DroSec_CAF1 109436 101 - 1
AGGU----GGCCACUGGACAUUGCUAGUGGACAGUGGAAAUUAAAUUCUUUUGUUUCUUUUCGUUUGUGCGCCUUAAAGAAGUUUGAAUGUUUAUUGCGAAAGAA
.(((----..((((((..(((.....)))..))))))..)))...(((((((((.......((((((.((...........)).))))))......))))))))) ( -26.32)
>DroSim_CAF1 119284 101 - 1
AGGU----GGCCACUGGACAUUCCUAGUGGACAGUGGAAAUUAAAUUCUUUUGUUUCUUUUCGUUCGUGCGUCUUGAAAAAGUUUGAAUGUUUAUUGCGAAAGAA
.(((----..((((((..(((.....)))..))))))..)))...(((((((((.......((((((.....(((....)))..))))))......))))))))) ( -30.02)
>DroEre_CAF1 105255 104 - 1
AGCUGGAUGACCACUGGCCGUUGCUAGUGGACAGUGGAAAUUAAAUUCU-UUGUUUCUUCUCGUUUUUGCUCCUUAAAGAAGUUUGAGCGUUUAUUGCGAAAGAA
.((((.....((((((((....)))))))).))))((((......))))-....(((((.((((...((((((((....)))...)))))......))))))))) ( -26.40)
>DroYak_CAF1 115768 101 - 1
AGCU----GACCACUGGACGUUGCUAGUGGACAGUGGAAAUGAAAUUCUUUUGUUUCUCUUCGUUUUUGCGCCUUGAAGAAGUUUGAACGUUUAUUGCGAAAGAA
.(((----(.(((((((......))))))).))))..........(((((((((.......(((((..((...........))..)))))......))))))))) ( -28.52)
>DroAna_CAF1 104184 94 - 1
A-----------ACUGGACUUUGCGAGUGGUCAGUGGAAAUGAAAUUCUUUUGUUUUGUCUCCCUUUUGCGACUCUAAGAAGUUUGCACGUUUGUUGCAGAAGAA
.-----------((((.(((........)))))))(((.(..((((......))))..).)))((((((((((....................)))))))))).. ( -22.35)
>consensus
AGCU____GGCCACUGGACAUUGCUAGUGGACAGUGGAAAUUAAAUUCUUUUGUUUCUUUUCGUUUGUGCGCCUUAAAGAAGUUUGAACGUUUAUUGCGAAAGAA
..........((((((..(((.....)))..))))))........(((((((((.......(((((..((...........))..)))))......))))))))) (-21.18 = -21.49 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:39 2006